Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i03f
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    30   1.1  
At1g16160.1 68414.m01936 protein kinase family protein contains ...    28   5.7  

>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
            dehalogenase-like hydrolase family protein /
            heavy-metal-associated domain-containing protein similar
            to cadmium efflux pump protein from Geobacillus
            stearothermophilus [GI:16753175], cadmium resistance
            protein B from Staphylococcus aureus [GI:14020985];
            T20K24.13 has been merged with T20K24.12 per suggestion
            of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 28   SALNEKNQIDKDLFFCCLIDFSCCC*YEYEITITKCLVCEVMMKY*NICRFICCLSR*GP 207
            S L EK  +D +  FCC     CC   E E+       C + +K    C+  CC    G 
Sbjct: 1003 SVLVEKEGLDMETGFCCDAKLVCCGNTEGEVKEQ----CRLEIKKEEHCKSGCC----GE 1054

Query: 208  NLRATKVTLTS 240
             ++  ++TL S
Sbjct: 1055 EIQTGEITLVS 1065


>At1g16160.1 68414.m01936 protein kinase family protein contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 711

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 327 VTRLDKERVVFINIPQDLDRPSRINEAQNPTTSNAASSANDIITEHQLPD---RAGGSNL 497
           ++R+++E VV I++P+  +    +   + P TS   SS    + +  LPD      GS  
Sbjct: 67  LSRINRE-VVNISLPEGNNEQYGVVHIKGPVTSLGCSSNTSQVPQKSLPDLNVTGKGSPY 125

Query: 498 HQTDDN 515
             TD+N
Sbjct: 126 FITDEN 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,753
Number of Sequences: 28952
Number of extensions: 244160
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)