Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i02r
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UJ93 Cluster: O-antigen polymerase; n=1; Shigella boy...    33   9.4  
UniRef50_Q8IE19 Cluster: Putative uncharacterized protein MAL13P...    33   9.4  
UniRef50_A0E6P5 Cluster: Chromosome undetermined scaffold_8, who...    33   9.4  

>UniRef50_Q6UJ93 Cluster: O-antigen polymerase; n=1; Shigella
           boydii|Rep: O-antigen polymerase - Shigella boydii
          Length = 392

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +2

Query: 353 KNKNKFIKIFLVCMFYN*LMILLTYNRNDWDVITND*KSDYERKCLIFKLFCIHCIFV*I 532
           K KNK + +FL+C  +    I + YN+   +++     SDY  + +    F I CIF  +
Sbjct: 7   KLKNKILSLFLLCETF--CFIYIIYNK---ELV-----SDYLGRAITLSEFTISCIFFLL 56

Query: 533 KLKYFTF 553
            L YF F
Sbjct: 57  LLFYFLF 63


>UniRef50_Q8IE19 Cluster: Putative uncharacterized protein
           MAL13P1.165; n=4; Plasmodium|Rep: Putative
           uncharacterized protein MAL13P1.165 - Plasmodium
           falciparum (isolate 3D7)
          Length = 611

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 540 NILRFNALLIYNITSHIILNMIKYYLLFKLSKN 638
           N + FN L+++NIT+  I+N +K+Y+  +  K+
Sbjct: 550 NYVFFNQLVVFNITTFFIINSMKFYIRVQTPKS 582


>UniRef50_A0E6P5 Cluster: Chromosome undetermined scaffold_8, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_8,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 804

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 539 LTLFRQKCNECKIV*KLDIFFHNRISSRWL*RPNHFDYMSIESLINCKTYIPKIFL 372
           LT+  Q   EC I+  L IFF   IS+ WL    H  + S  ++  C +   K+ +
Sbjct: 413 LTIIAQVMKECIIIFTLFIFFDQEISTNWLTSSRH-QFQSSITITACNSMPNKLII 467


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,999,116
Number of Sequences: 1657284
Number of extensions: 10610062
Number of successful extensions: 18490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18479
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)