Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i02r
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-4|CAE45745.1|  169|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z98866-3|CAB11559.1|  321|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AB070574-1|BAB63948.1|  321|Caenorhabditis elegans Ser/Thr prote...    28   5.8  

>Z98866-4|CAE45745.1|  169|Caenorhabditis elegans Hypothetical
           protein Y49E10.3b protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 300 KQI*IRQRCNINKQPQKKSICGAIRVVCINRESCLSWQ*NHSICSD 163
           +QI I  RC +  + Q KSIC  +R + I   +        +IC D
Sbjct: 19  RQIEIAMRCELICETQVKSICAKVREILIEEANVQVIDTPVTICGD 64


>Z98866-3|CAB11559.1|  321|Caenorhabditis elegans Hypothetical
           protein Y49E10.3a protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 300 KQI*IRQRCNINKQPQKKSICGAIRVVCINRESCLSWQ*NHSICSD 163
           +QI I  RC +  + Q KSIC  +R + I   +        +IC D
Sbjct: 19  RQIEIAMRCELICETQVKSICAKVREILIEEANVQVIDTPVTICGD 64


>AB070574-1|BAB63948.1|  321|Caenorhabditis elegans Ser/Thr protein
           phosphatase protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 300 KQI*IRQRCNINKQPQKKSICGAIRVVCINRESCLSWQ*NHSICSD 163
           +QI I  RC +  + Q KSIC  +R + I   +        +IC D
Sbjct: 19  RQIEIAMRCELICETQVKSICAKVREILIEEANVQVIDTPVTICGD 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,299
Number of Sequences: 27780
Number of extensions: 281276
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)