Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10i02f
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 120 1e-28
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 98 1e-21
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 0.87
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 3.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 4.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.7
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 26 4.7
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 26 4.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.7
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 6.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 8.1
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 8.1
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 8.1
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 8.1
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 120 bits (290), Expect = 1e-28
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +2
Query: 119 RSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPET-RRPQLEKEFKGFKTLFSRFL 295
R H ++ S F A + ++ EL L ST + + +KE F +LFSR+L
Sbjct: 10 RQHSKSQSAFA-FDNTATSIAASTMKNELNHLASTVKDPLAKKAFQKEMDNFFSLFSRYL 68
Query: 296 AE--QGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKG 469
E +G + W+ +E V++Y+++ T L+KL V+KLNGGLGT+MGC G
Sbjct: 69 QEDARGSEINWDLVESPKPEQVVEYDTI-TEAGGLSRDYLNKLAVLKLNGGLGTTMGCVG 127
Query: 470 PKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMN 583
PKS+I+VR+ +FLDL+V+QIEHLN+ Y NVP VLMN
Sbjct: 128 PKSIIEVRDGNSFLDLSVRQIEHLNRKYNVNVPFVLMN 165
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 97.9 bits (233), Expect = 1e-21
Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Frame = +2
Query: 119 RSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFKTLFSRFLA 298
R H ++ S + DF + + ++ EL+KL+ + + + + F L+ R+L
Sbjct: 5 RIHFKSQS-TLDFDSVAVSISASTMKNELDKLVLNSRVSDKKTFGIQMDNFFALYRRYLL 63
Query: 299 E--QGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGP 472
+G W+ I L +IDY L P N L++L VVKLNGG+G ++G P
Sbjct: 64 HTVKGYECDWDSIRPLGPEDMIDYGDL--PLCKNAGKYLNRLAVVKLNGGMGNALGVNYP 121
Query: 473 KSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVLMN 583
K++I+VR++ +FLDL+++QIE+LN+ Y +VP +LMN
Sbjct: 122 KAMIEVRDNQSFLDLSIRQIEYLNRRYDVSVPFILMN 158
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 28.3 bits (60), Expect = 0.87
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 83 MKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKL 214
M E N ++ K+R+++R +FKE D L + +E L
Sbjct: 734 MPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMHIESSTL 777
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 476 IWGPYSPWMYPGLR 435
+WGPY P +Y G+R
Sbjct: 43 LWGPYRPNLYVGIR 56
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 316 NMGENREASRRSCNRL*QSVH 378
N+G N AS R CNR+ ++++
Sbjct: 291 NLGPNYRASTRKCNRIKEAIN 311
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 520 GKIKEGQVIPDLDHRFGALTAHGCTQASVKLHHHQLVE 407
GK GQV+ +DH+ G + A + K H LVE
Sbjct: 525 GKGSFGQVLKCIDHKRGQVVAIKVIKNRQKFHGQTLVE 562
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 393 LSVVGVDRLL*SITAPSGSFSIFSHVTDGPCSAKNLLKSVLKPLNSFSSCGRLVSGA 223
L+ VG+ +T P G F + + DGP K L LK ++ S + GA
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 393 LSVVGVDRLL*SITAPSGSFSIFSHVTDGPCSAKNLLKSVLKPLNSFSSCGRLVSGA 223
L+ VG+ +T P G F + + DGP K L LK ++ S + GA
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 520 GKIKEGQVIPDLDHRFGALTAHGCTQASVKLHHHQLVE-HMVHVVRRW 380
GK GQV+ +D+ G L A + + H LVE ++ +R W
Sbjct: 706 GKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREW 753
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -3
Query: 576 RTSGTLHLYVLFKCSICCTVRSRKVRSFRTWITDLGPLQPMDVPRP-PLSFTTTNLSSIW 400
R T HL VL C IC + K + + TD +Q P SF LS W
Sbjct: 216 RFYATFHLIVLVVCMICLLAKCPKFNTGKYVFTD---VQASSGWHPIGFSFLFGFLSVAW 272
Query: 399 C 397
C
Sbjct: 273 C 273
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = +2
Query: 101 DSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFK 274
+ +KK R R K +T D LA EV E IST E K+ G K
Sbjct: 184 EREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAGSK 241
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 341 PEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGG 442
P+G ID N+L+T T +N+ ++++ + N G
Sbjct: 55 PQGDPIDKNNLNTNTENNLPNIVNFQNISSANSG 88
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 425 VKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKT 550
VKL+G + T + CK ++++ +D+ F+ ++ LNKT
Sbjct: 180 VKLDG-IVTVIDCKNIDNILKDESDIGFIQISHADCLILNKT 220
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 77 KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRP 244
K+ K E DK+ S +R SGS D +E K+ + + E + E RP
Sbjct: 197 KKKKKEHKKKDKESSSKKRK-SGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRP 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,005
Number of Sequences: 5004
Number of extensions: 49345
Number of successful extensions: 143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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