Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i02f
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                165   2e-41
SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.2  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   2.8  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   3.7  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         29   3.7  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   3.7  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 29   3.7  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     29   3.7  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)             28   4.9  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)                     28   6.4  
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                27   8.5  
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)               27   8.5  
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)                  27   8.5  

>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score =  165 bits (401), Expect = 2e-41
 Identities = 78/145 (53%), Positives = 99/145 (68%)
 Frame = +2

Query: 149 RDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGPSVTWEK 328
           + FK  +++DA  R+E E+ KLI  AP  ++    KE   FK LF R+L E GPSV WEK
Sbjct: 175 QQFKSLSRKDAFERMETEINKLIEFAPAPQKDLASKEMNNFKGLFKRYLQETGPSVVWEK 234

Query: 329 IEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGPKSVIQVRNDLTF 508
           I   P+G V++Y+ +S     ++   LDKLVV+KLNGGLGT+MG  GPKS+I V  +LTF
Sbjct: 235 IHPPPKGLVVNYDEVSHAEPADIKAALDKLVVIKLNGGLGTTMGLVGPKSLISVTQELTF 294

Query: 509 LDLTVQQIEHLNKTYKCNVPLVLMN 583
           LDL +QQIEHLN  Y  NVPLVLMN
Sbjct: 295 LDLNIQQIEHLNNKYGSNVPLVLMN 319


>SB_36974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 77  KEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEK 256
           +E++P      +   S +  P   R+ +E   R ALA+L  ++ + + T    R   ++K
Sbjct: 8   RELQPSEIQRKEASASREELPERKREAREKN-RAALAKLSAQIWRGVPTCIPCRLHHVQK 66

Query: 257 EFKGFKTLFSR 289
           E  G K L ++
Sbjct: 67  EIAGAKQLHTK 77


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 83  MKPETNDSDKKIRSHQRTPSGSRDFKEATKRD---ALARLEVELEKLISTAPETRRPQLE 253
           ++ E    DK++R+++R  S   D  EA K+D   A  + EVE  + ++   + R  +++
Sbjct: 302 LREEVGSKDKQVRNYERKNSDLEDQVEALKQDCSQAQMKAEVESRQRMNLEKDLRNSEMK 361

Query: 254 KEFKGF 271
             ++ +
Sbjct: 362 VLWRSY 367


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 59  LSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLI---STAP 229
           L   L K  K    + ++K R    T +  R ++ A K+D L     ELE L+   ST  
Sbjct: 555 LQTRLAKSAKELEEELERK-REDYNTAADERRYQMAKKKDTLQATRSELETLVKDLSTKT 613

Query: 230 ETRRPQLEKEFK 265
              R  LEKE +
Sbjct: 614 GKERLALEKEIQ 625


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/122 (20%), Positives = 57/122 (46%)
 Frame = +2

Query: 191  LEVELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGPSVTWEKIEKLPEGAVIDYNS 370
            ++V ++ L     + ++PQ E     ++ L    +     +  + K+E+  EG ++  NS
Sbjct: 760  IDVPMKPLFWKRIQLKKPQPEPYTTLWENLIEPDINTSEFAKCFSKVERKKEGKLVSSNS 819

Query: 371  LSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKT 550
            +S      V H+L+     K + G+G  +      ++ ++++ L  +D +V   E+L   
Sbjct: 820  MS-KLKQKVVHLLES----KRSQGIGILLSSL-HANLDEIKDSLYKMDTSVIDYENLKAL 873

Query: 551  YK 556
            Y+
Sbjct: 874  YE 875


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 224 PWR*ASPAPPPVERGHHVWWPP*SHETLTASAGDCES 114
           PW    P  PP    H  W+PP S E   +S G+CES
Sbjct: 294 PW----PTTPPGCHFHGKWYPPGS-EISMSSYGECES 325


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 242 PQLEKEFKGFKTLFSRFLAEQGPSVTWEKIEKLPE----GAVIDYNSLS 376
           P+LE + + FK     F+ +QG SV  EKI ++ E      VIDYN L+
Sbjct: 113 PRLEIKNR-FKQFLRTFVDDQGHSVYREKIRQMCEANKQSLVIDYNILA 160


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 80  EMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARL--EVELEKLISTAPET 235
           E KP+ N  +K     Q TP  SR   + T  +A  +   +  L++ + T+P+T
Sbjct: 299 EDKPKENQQNKPEDKQQTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKT 352


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 80  EMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARL--EVELEKLISTAPET 235
           E KP+ N  +K     Q TP  SR   + T  +A  +   +  L++ + T+P+T
Sbjct: 79  EDKPKENQQNKPEDKQQTTPKTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKT 132


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 56  LLSRLLHKEMKPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPET 235
           LL +L   E     +   + + SH RT SGS +  E TK +   RL+  +++L S     
Sbjct: 698 LLQKLDRNETHTSRDQPWESVSSHSRTSSGSSNDMEFTKEEE-TRLKSYIQQLRSERSTI 756

Query: 236 RRPQLEKE 259
               LE E
Sbjct: 757 GSTVLELE 764


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 86   KPETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEKE 259
            K E +D  + IR         RD K  + R+   + E ELE++     E  +   +KE
Sbjct: 1094 KIEASDEIENIRKEMANAVSQRDLKNESLRNRAEQAEKELEEVFGREQELLQSHGQKE 1151


>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 44  CYQSLLSRLLHKEMKPETNDSDKKIRSHQRTPSGSR 151
           C Q L S+LL +  + + +D D++ R H+R  S SR
Sbjct: 306 CLQGLESQLLERSHRKDRDDDDRE-RRHRRRRSRSR 340


>SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)
          Length = 70

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 212 ASPAPPPVER-GHHVWWPP 159
           ASP PPPV+  GH   WPP
Sbjct: 46  ASPPPPPVQIIGHTFVWPP 64


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 425 VKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQIEHLNKTYKCNVPLVL 577
           V+  GG+ T       +SV+Q    L F+ +     + LN+T KC +  V+
Sbjct: 243 VETKGGIFTLRNIYLTQSVLQAMFSLVFIGVDAGYHKKLNQTIKCEIDEVI 293


>SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)
          Length = 297

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -2

Query: 466 LTAHGCTQASVKLHHHQLVEHMVHVVRR--WRGQTVIIDYSSFWKLLDFLPC 317
           L AH     +V LH      H  H  R    + + + I  S+ W L +FL C
Sbjct: 100 LRAHPTVPITVSLHKQTTTRHS-HSARNSSLQAEVLAIAQSNLWSLAEFLAC 150


>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 338 LPEGAVIDYNSLSTPTTDNVHH 403
           +PEGA +  N L+ P+  N HH
Sbjct: 1   MPEGAEVFSNPLAPPSASNAHH 22


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = -3

Query: 537 CSICCTVRSRKVRSFRTWITDLGPLQPMDVPRPPLSFTTTNLSSIWCTLSVVGVDRLL*S 358
           CS CC V+ RK  + R       PL+ + +  P L F TT       +  V  V + +  
Sbjct: 121 CSQCCGVKKRKT-TMRYPSVQNHPLKHLAIVIPKLPFQTTRHCLQQQSKDVQDVKQTMTE 179

Query: 357 ITAPSGSFSIFSHVTDGPCSAKNLLKSVLKPL 262
           +T    S     H +  P +  N+L+S  K L
Sbjct: 180 LTLSFPS----PHGSVEPSNDVNILRSPFKSL 207


>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
          Length = 928

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 374 TDCYNRLQLLLEASRFSPMLPTDPVQP 294
           TDC  RL  + ++S  SP LP+ P  P
Sbjct: 406 TDCLQRLLAIRQSSAQSPSLPSRPGPP 432


>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
          Length = 944

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
 Frame = +2

Query: 89  PETNDSDKKIRSHQRTPSGSRDFKEATKRDALARLEVELEKLISTAPET-RRPQLEKEFK 265
           P+  DS        +TP       E+  ++ + R+  EL K +   P T  + Q+E   +
Sbjct: 77  PQEKDSSNAQDEIHQTPPSQVQIPESVIQEVVQRVTAELSKQLLPCPSTSTQHQVEHNSR 136

Query: 266 GFKTLFSRFLAEQGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNVHHMLDKL 418
             + +    +A    + T +   +    A +  N  S+P+      + DKL
Sbjct: 137 PSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPSLPVDARVSDKL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,167
Number of Sequences: 59808
Number of extensions: 407607
Number of successful extensions: 1475
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)