Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10i02f
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.9  

>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 200 ELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGP---SVTWEKIEKLPEGAVIDYNS 370
           E+EKL S   ++R P          T  +  L+++GP    +   +++K+      D   
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQINATELQKIKLEIHRDLPG 130

Query: 371 LSTPTTDNV 397
            ST TT  V
Sbjct: 131 KSTTTTVEV 139


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 200 ELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGP---SVTWEKIEKLPEGAVIDYNS 370
           E+EKL S   ++R P          T  +  L+++GP    +   +++K+      D   
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKGPEGIQINATELQKIKLEIHRDLPG 130

Query: 371 LSTPTTDNV 397
            ST TT  V
Sbjct: 131 KSTTTTVEV 139


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 444 WVHPWAVRAPNR 479
           W+HPW     NR
Sbjct: 542 WIHPWLPLLRNR 553


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 397  HVVRRWRGQTVI 362
            HVVR WRG   +
Sbjct: 1322 HVVRPWRGSATL 1333



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 187 STGGGAGEAHLHGP 228
           S GG   +AHL GP
Sbjct: 17  SAGGHGFDAHLRGP 30


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 397  HVVRRWRGQTVI 362
            HVVR WRG   +
Sbjct: 1318 HVVRPWRGSATL 1329



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 187 STGGGAGEAHLHGP 228
           S GG   +AHL GP
Sbjct: 17  SAGGHGFDAHLRGP 30


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 200 ELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGP 310
           E+EKL S   ++R P    +     T  +  L+++GP
Sbjct: 71  EIEKLGSERSKSRSPDSRDKSNTSNTSKTIILSDKGP 107


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 200 ELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGP---SVTWEKIEKLPEGAVIDYNS 370
           E+EKL S   ++R P          T  +  L+++GP    +   +++K+      D   
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKGPEGIQINATELQKIKLEIHRDLPG 130

Query: 371 LSTPTTDNV 397
            ST TT  V
Sbjct: 131 KSTITTVEV 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,128
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)