Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h24r
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 154 2e-38
07_03_0361 + 17215312-17216217 29 0.86
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 3.5
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 4.6
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451... 27 6.1
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 6.1
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 6.1
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 6.1
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 27 6.1
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 154 bits (373), Expect = 2e-38
Identities = 66/99 (66%), Positives = 84/99 (84%)
Frame = -2
Query: 326 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 147
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 146 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPK 30
+ LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE 99
>07_03_0361 + 17215312-17216217
Length = 301
Score = 29.5 bits (63), Expect = 0.86
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = -2
Query: 359 RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAA 180
R+ +G+E T K++ GG G G + V+ + +A K+ ++ +VE AA
Sbjct: 47 RAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAA 101
Query: 179 VRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 54
+N + +YP M +L + + + + S R +++
Sbjct: 102 SHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 267 REMHKLRAVRAKGQGHQKVRD*EHRRSGGGQR 172
R+ K ++ R K +G +K R EH R GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 93 HPQQSCQEQIEERQKNPYSSQE 28
+PQQS Q+Q EE+Q P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637
>12_01_0556 -
4514686-4514868,4515168-4515290,4515381-4515617,
4515747-4516358
Length = 384
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 177 DRRRFYDVPNHELFDGLVLWHAPRAVCASHGFNVT---TSMLGASSITALTSHVSNLRSG 347
D ++++ V H+ +G+V +A R + + G N S+ G + H S+ RS
Sbjct: 107 DVQKYWVVTTHDQVNGMVSKYAARFLVVASGENSAGNIPSIPGLEDFSGHVIHSSSFRSA 166
Query: 348 EQRTAEK 368
+ A++
Sbjct: 167 DSYAAQR 173
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -2
Query: 323 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 174
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 159 GIVNISDRRRFYDVPNHELFDGLVLWHAPRAVCASHGFN--VTTSMLGASSIT 311
GI + D +YD + LF+ L+ P A +SH F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 177 DRRRFYDVPNHELFD 221
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 282 TSMLGASSITALTSHVSNLRSGEQ 353
+SML +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,207,393
Number of Sequences: 37544
Number of extensions: 195056
Number of successful extensions: 540
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -