Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h24r
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 160 3e-40
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 158 1e-39
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 158 1e-39
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 28 1.7
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 27 2.9
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 3.9
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim... 26 6.8
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 26 6.8
At5g59110.1 68418.m07407 subtilisin-like serine protease-related... 26 9.0
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 26 9.0
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 26 9.0
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 26 9.0
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 26 9.0
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 160 bits (388), Expect = 3e-40
Identities = 69/98 (70%), Positives = 82/98 (83%)
Frame = -2
Query: 326 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 147
MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 146 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 33
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 158 bits (383), Expect = 1e-39
Identities = 68/98 (69%), Positives = 81/98 (82%)
Frame = -2
Query: 326 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 147
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 146 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 33
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 158 bits (383), Expect = 1e-39
Identities = 68/98 (69%), Positives = 81/98 (82%)
Frame = -2
Query: 326 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 147
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 146 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 33
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 240 APRAVCASHGFNVTTSMLGASSITALTSHVSNLRSGEQRTAE 365
+P+ + A++ N TSM A S SHV++L + E RT++
Sbjct: 485 SPQDILATNAANFGTSMPAAQSSQFQGSHVTSLGNCEGRTSD 526
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 116 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 6
L S A+ + V N+SKK PP FPR +S
Sbjct: 26 LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS 62
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 269 AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 126
++ C C VP+ +K + AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613
>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 587
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 286 DVVTLKP*DAQTARGACQRTRPSKS 212
DVVTL A+T RG C RP KS
Sbjct: 204 DVVTLADRLAETYRGFCIPPRPDKS 228
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 240 APRAVCASHGFNVTTSMLGASSITALTSHVSNLRSGEQRTA 362
A ++VC N +T ++ + +++TSH S L S E+ T+
Sbjct: 356 ALKSVCLPTTLNESTILINGDNSSSMTSH-SELSSNEEMTS 395
>At5g59110.1 68418.m07407 subtilisin-like serine protease-related
similar to prepro-cucumisin GI:807698 from [Cucumis
melo], subtilisin-like protease C1 [Glycine max]
GI:13325079
Length = 172
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 305 GGRAKHGRGHVKAVRCTNCARCVPKDKA 222
G RA +G GHV + TN DKA
Sbjct: 2 GKRATYGAGHVDPIAATNPGLVYEMDKA 29
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 240 APRAVCASHGFNVTTSMLGASSITA 314
A V S G+ +TS +GAS++TA
Sbjct: 246 AEEEVLRSQGYKASTSEIGASAVTA 270
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -2
Query: 299 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 153
+ K ++KAV AR P+DK + K V +V+ AA + +++A +
Sbjct: 361 KEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAA-KKVSEAEI 408
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 251 CARCVPKDKAIKKFVIRNIVEAAAVRDIN 165
CARCVP K I+ + +V +A D+N
Sbjct: 609 CARCVPMGKGIET-KLPEVVNCSARTDLN 636
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 275 VKAVRCTNCARCVPKDKAIKK-FVIRNIVEAAA 180
V V+ TN C PKD+ ++K F ++ A A
Sbjct: 34 VAIVKATNHVECPPKDRHLRKIFAATSVTRARA 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,649,651
Number of Sequences: 28952
Number of extensions: 135974
Number of successful extensions: 328
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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