Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h22r
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0708 - 6137865-6140909                                           29   3.9  
11_01_0148 + 1242454-1242634,1242774-1243648                           29   5.2  
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    28   9.1  

>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 683 ISRNKFETFLNYLSSFHKQICTINVTN 603
           +S+NKFE     +   HK++ TIN+TN
Sbjct: 298 LSKNKFEGLFPPIIFQHKKLVTINITN 324


>11_01_0148 + 1242454-1242634,1242774-1243648
          Length = 351

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 348 FHPTSSEVVAYLFFNYLFYKFVNKRTTRL 434
           FHPT +EV+     NYL  KF+N   T L
Sbjct: 20  FHPTDAEVI----LNYLLEKFINPSFTSL 44


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 637 KLDK*FKKVSNLLREMNVCCAKTKKKHIDYRAKSIM 744
           K  K  +K+SNL++++N    + K +H+ Y   S++
Sbjct: 267 KKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVV 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,400
Number of Sequences: 37544
Number of extensions: 234433
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)