Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21r
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 204 PGSCLAGSVRTTSRSDSNQ 148
           PG C A  V  TS  +SN+
Sbjct: 725 PGECCAICVNATSLVESNR 743


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 309 LAGWYT*DLYKSLSPV 356
           ++G Y  D YK LSP+
Sbjct: 47  ISGVYRTDFYKKLSPM 62


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 397 VVWPHW*QPTRLTRRP 444
           ++WP W   TR + RP
Sbjct: 188 MLWPAWVYCTRYSDRP 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,456
Number of Sequences: 336
Number of extensions: 2417
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)