Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21r
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    30   0.17 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   2.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   3.7  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   6.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 328 YVYQPARPNTIQY-QDIVYRGNATTRITAIQAT-EVGATQYASAWILSGGLSQNNVT 164
           Y YQ A PN+I +  D+    N T  + A Q T E  A      W  S  L+ +N+T
Sbjct: 127 YAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTAS-SLNSHNLT 182


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 298 IQYQDIVYRGNATTRITAIQATEVGATQYAS 206
           +Q+QDIVYR N +      QA      Q+ S
Sbjct: 81  VQFQDIVYRSNTSASEIHFQAENAPLVQWYS 111


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 250 TAIQATEVGATQYASAWILSGGLSQNNVTVRFQS 149
           TA+ +T +G  +  +  I SG L +NNV  +F S
Sbjct: 33  TAVNSTTLGLAEKVNFAITSGLLDRNNVWRQFTS 66


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 270 VTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQL 145
           V Q R + L R   L +  ++ PGSCL G+   T+   + QL
Sbjct: 402 VAQLRDIVL-RSETLAENPSNMPGSCLPGASSNTADEFTEQL 442


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 139 YGYYYLFDVWGR*FFDNSSFIKLSKYCT*HSYLQETILS 23
           YGY ++F +WG   F    F+     C  H+   E  +S
Sbjct: 325 YGYQWMFLIWGVVAFTQGLFLPRWLPCIKHNQHNEKWIS 363


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 214 YASAWILSGGLSQNNVTV-RFQSARG-YGYYYLFDVWG 107
           Y +A I +  +S  +    +   ARG YGY ++F +WG
Sbjct: 226 YTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWG 263


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 330 DLYKSLSPVLT*PTIRLALVLDGSMAA 410
           D Y  LS +LT  + RLAL  D ++ A
Sbjct: 255 DDYNELSSILTTTSARLALTTDANLKA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,701
Number of Sequences: 5004
Number of extensions: 39546
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)