Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21r
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965     29   2.1  
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255...    29   2.1  
07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742     28   5.0  
01_03_0099 + 12547235-12547510                                         28   5.0  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    27   6.5  

>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
          Length = 880

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 237 PRKLGQLSTHQ----PGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFLITL 85
           P  LG LS+       G+ L GS+ +T  S  N L   D+  ++ +GD NFL T+
Sbjct: 172 PASLGNLSSLAILLLKGNLLDGSLLSTVDS-MNSLTAVDVTKNNLHGDLNFLSTV 225


>11_08_0012 +
           27623055-27623277,27623291-27625165,27625456-27625567,
           27625586-27626130,27626305-27626591,27626770-27626805
          Length = 1025

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 237 PRKLGQLSTHQ----PGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFLITL 85
           P  LG LS+       G+ L GS+ +T  S  N L   D+  ++ +GD NFL T+
Sbjct: 382 PASLGNLSSLAILLLKGNLLDGSLPSTVDS-MNSLTAVDVTENNLHGDLNFLSTV 435


>07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742
          Length = 244

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 439 FALVVLAATNAAILPSSTRANLIVGYVSTGDRLLYRSYVYQ 317
           F + +L+  +   L SST ANL     +  DRL+ RS  Y+
Sbjct: 151 FRVFILSGRDQQTLASSTAANLAAAGFAGYDRLIMRSAEYR 191


>01_03_0099 + 12547235-12547510
          Length = 91

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 433 LVVLAATNAAILPSSTRANLIVGYVST 353
           L++LAA  A  LP+++RA L VG+ +T
Sbjct: 11  LMLLAAALACSLPAASRAQLQVGFYNT 37


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 479 QSVAHLKDEYNFGLRVSRVGCYQC-GHTTV 393
           +SV  +KD  NFG+ +S +  ++C GH  V
Sbjct: 123 RSVVRVKDMQNFGIDMSYIQTFKCNGHKVV 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,392
Number of Sequences: 37544
Number of extensions: 251214
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)