Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21r
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)                 27   8.9  
SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26)                   27   8.9  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         27   8.9  
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_35832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 430 VVLAATNAAILPSSTRANLIVGYVSTGDRLLYRS 329
           V++  TN AI P STR  L  G + T D  LYRS
Sbjct: 324 VLIRFTNRAI-PRSTRIRLCGGVIVTHDGKLYRS 356


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = -2

Query: 260  DAHYGYTGHGSWGNSVRISLD 198
            +++YG+ G  S+GN++++S+D
Sbjct: 1418 ESYYGWDGVCSYGNAIKVSID 1438


>SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
          Length = 894

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 172 CSD*ARQTGSRLMRTELPQLPW 237
           C   +R     LM TELP LPW
Sbjct: 629 CRKQSRNPAEPLMATELPSLPW 650


>SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26)
          Length = 684

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 172 CSD*ARQTGSRLMRTELPQLPW 237
           C   +R     LM TELP LPW
Sbjct: 371 CRKQSRNPAEPLMATELPSLPW 392


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 191 RQDPG*CV-LSCPNFRGLYSRNARRCVTAIHYVLVLNSIRPSWLVYVGSVQKSVSCTNV 364
           RQ+PG     + P+  GL+S    + +  I +++V +  +  W +Y  +     SC ++
Sbjct: 695 RQEPGQVKPFAVPHLIGLHSAAPAKKLAGIEWLIVRSLWKQMWCIYSLTAHARGSCADI 753


>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = -1

Query: 273 AVTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFL 94
           A  + R +  Y PR++ Q       SC   +  TT  S ++    T  +   T   AN +
Sbjct: 204 ARVRARGMDSYLPRRIDQSEREITNSCAKPNEETTLPSPNSASSITQEVQDGTASGANLI 263

Query: 93  ITLLS*NCLNIVPS 52
           +     N  N  PS
Sbjct: 264 VHGGETNEANETPS 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,124
Number of Sequences: 59808
Number of extensions: 294585
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)