Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21r
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35625.1 68414.m04426 protease-associated zinc finger (C3HC4-...    35   0.027
At5g45400.1 68418.m05579 replication protein, putative similar t...    29   1.8  
At5g63100.1 68418.m07922 expressed protein                             27   7.3  
At5g47480.1 68418.m05863 expressed protein                             27   7.3  
At5g08280.1 68418.m00975 hydroxymethylbilane synthase / porphobi...    27   9.6  
At4g17640.1 68417.m02637 casein kinase II beta chain, putative s...    27   9.6  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    27   9.6  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    27   9.6  

>At1g35625.1 68414.m04426 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 279

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 344 TFVQILRIPAS*AEYYSIPRHSVSR*RNDAHYGYTGH 234
           TFV +L I A  A Y+S+ RH + +   D H+G  GH
Sbjct: 129 TFVSLLVISAVLASYFSVRRHRIRQHVRDLHHGGQGH 165


>At5g45400.1 68418.m05579 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain, PF04057:
           Replication factor-A protein 1, N-terminal domain
          Length = 853

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -3

Query: 322 YQPARPNTIQYQDIVYRGNATTRITAIQATEVGATQYASAWILSGGLSQNNVTVRFQSAR 143
           YQP +P     +  V R  A  RI  I A       Y   W +   ++      RF + R
Sbjct: 276 YQPQQPPMYVNRGPVARNEAPPRINPIAALN----PYQGRWTIKVRVTSKADLRRFNNPR 331

Query: 142 GYGYYYLFDV 113
           G G  + FD+
Sbjct: 332 GEGKLFSFDL 341


>At5g63100.1 68418.m07922 expressed protein 
          Length = 329

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -1

Query: 240 RPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFLITLLS*NCLNI 61
           R R  G++  +  G C+      + R  +  +E+T  + S  +GD  F++TL + N  ++
Sbjct: 234 RLRYRGRIMVNVGGKCV--EAEDSDRDGALVMEETLRVMSQVFGDKLFVLTLGNGNDSSV 291

Query: 60  -----VPSIHIYKKR 31
                +P +  +KKR
Sbjct: 292 ALTGDLPDLDAWKKR 306


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 225 GQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITS 121
           G +   +P S +A        SD+N+L D D++ S
Sbjct: 84  GSVGKEEPSSSIAPEAVQFVNSDANRLRDVDVVRS 118


>At5g08280.1 68418.m00975 hydroxymethylbilane synthase /
           porphobilinogen deaminase, chloroplast /
           pre-uroporphyrinogen synthase identical to SP|Q43316
          Length = 382

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 277 YRGNATTRITAIQATEVGATQYASAWILSGGLSQNNVTV 161
           +RGN  TR++ +Q  +V AT  A A +    +++N  ++
Sbjct: 222 FRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASI 260


>At4g17640.1 68417.m02637 casein kinase II beta chain, putative
           similar to casein kinase II beta' chain (CK II)
           [Arabidopsis thaliana] SWISS-PROT:P40229
          Length = 282

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 228 LGQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITSSTYG 109
           +G+   H   S  +GS+  T+ SD+  + DTD   S   G
Sbjct: 49  MGKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSG 88


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 162 SDSNQLEDTDIITSSTYGDANFLITLLS*NCLNI 61
           SD  QL+  D+ ++S +GD   L +L S   LNI
Sbjct: 599 SDLTQLQSLDLSSNSLHGDIKVLGSLTSLASLNI 632


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 181 SQNNVTVRFQSARGYGYYYLFDVWGR 104
           +QN+  + F     YG  YL +VWGR
Sbjct: 430 TQNHSQIYFPKTFPYGKRYLDEVWGR 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,427
Number of Sequences: 28952
Number of extensions: 199491
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)