Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21f
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_35832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 78  VVLAATNAAILPSSTRANLIVGYVSTGDRLLYRS 179
           V++  TN AI P STR  L  G + T D  LYRS
Sbjct: 324 VLIRFTNRAI-PRSTRIRLCGGVIVTHDGKLYRS 356


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +2

Query: 248  DAHYGYTGHGSWGNSVRISLD 310
            +++YG+ G  S+GN++++S+D
Sbjct: 1418 ESYYGWDGVCSYGNAIKVSID 1438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,375,766
Number of Sequences: 59808
Number of extensions: 317114
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)