Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h21f
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 264 IQATEVGATQYASAWILSGGLSQNN 338
           + A ++   ++   W+L  GL  NN
Sbjct: 128 VSAFKIAVDKFDRLWVLDSGLVNNN 152


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +1

Query: 175 DPTYTSQLGR----ILFNTKT*CIAVTQRRALRLYRPRKLGQLSTHQPGSCLAGSV-RTT 339
           D TY  +L R     +FN    CI +     L  Y P + G+  T    + L+ +V   T
Sbjct: 202 DITYEIRLRRRPMFYVFNLILPCILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMT 261

Query: 340 SRSDSNQLEDTDIITSSTYGDANFLITLLS 429
            R      E T +I S  YG +  L+T  S
Sbjct: 262 IRESLPPTEKTPLI-SLYYGVSICLVTFAS 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,848
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)