Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h19r
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183 30 1.6
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525... 29 2.9
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 5.0
02_01_0651 - 4844263-4844346,4844433-4844498,4844961-4845026,484... 29 5.0
08_02_1494 + 27523016-27524040,27524971-27525118 28 6.6
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 6.6
09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064 28 8.8
02_05_0219 + 26870970-26873117 24 9.5
>09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183
Length = 359
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -1
Query: 683 FPSGLY--PLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAH 510
+ SG+Y P TR+ + VGYG T + + ++ W T + E ++
Sbjct: 265 YKSGVYSGPCGTRINHAVLAVGYGVTLNNT---KYWIVKNSWNTTWGESGYIRMKRDVGG 321
Query: 509 LKVILGVGELGTYYNVYKASMIAMMAGA 426
K + G+ G Y K S + A A
Sbjct: 322 NKGLCGIAMYGIYPTKTKTSTFSAAARA 349
>10_02_0096 -
5248369-5248479,5248562-5248604,5249093-5249178,
5250089-5250153,5252539-5252747,5253077-5253188,
5253271-5253322,5254593-5254685,5254997-5255146,
5255223-5255327,5255858-5255891,5256145-5256281,
5257691-5257819,5257899-5257977,5258081-5258156,
5258981-5259070,5259181-5259259,5259397-5259431,
5260722-5260811,5260913-5261027
Length = 629
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 482 LGTYYNVYKASMIAMMAGADFIKTSTGKEAVNATLPIGLVMCRAIRR 342
+G Y N +K S M GAD I + N TL IGL+ +RR
Sbjct: 134 IGQYGNGFKTS--TMRLGADAIVFTRANRGSNVTLSIGLLSYTFLRR 178
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 680 PSGLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNE--IQQMKKACGSAHL 507
P L P AT+ EEI+ + ID+ I V+ + + +F+ + M K GS+ +
Sbjct: 120 PGMLPPFATQTEEIKAMAKHCTAGIDIRISNERVILLDTQPVFSPSVLIDMMKPDGSSAI 179
Query: 506 KVILG 492
++ G
Sbjct: 180 PILSG 184
>02_01_0651 -
4844263-4844346,4844433-4844498,4844961-4845026,
4845113-4845168,4845340-4845412,4845538-4845622,
4845710-4845822,4845957-4846029,4846509-4846907,
4846999-4847117
Length = 377
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = -1
Query: 608 IDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVILGVGELGTYYNVYKASMIAMMAG 429
+ + + RSL L G W++L N S + I+ L Y+ V + M+ G
Sbjct: 198 VGISLARSLCLDGTWQSLANSF--------SMNASYIIST-VLWVYWGVCISDMVPFYLG 248
Query: 428 ADFIKTSTGKEAVNATLPIGLVMCRAIRRYYQMTGHKVG 312
F +T E +++ + IG +I R Q G+ +G
Sbjct: 249 KLFRQT-RASEDISSKIGIGKEKALSISRAVQKYGNLIG 286
>08_02_1494 + 27523016-27524040,27524971-27525118
Length = 390
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 487 PTPRITLRCADPHAFFICCISLNSVSHSPVK 579
P+P + + PH +CC+ ++ + +P K
Sbjct: 98 PSPHVRVEAVSPHRGLVCCVDADADAATPRK 128
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 699 CSGYRISVWFVSSRNEIRRDSDDRRV 622
C+GYR S F+ + ++ D DD R+
Sbjct: 329 CTGYRYSFPFLDTEGKVAVDDDDNRI 354
>09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064
Length = 369
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = -1
Query: 683 FPSGLY--PLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAH 510
+ G+Y P T + + VGYGAT + + ++ W T + E+ ++ A
Sbjct: 282 YKQGVYSGPCGTSINHAVLAVGYGATPDNT---KYWIVKNSWGTGWGEMGYIRMKRDIAA 338
Query: 509 LKVILGVGELGTYYNVYKASMIAMMAGA 426
+ G+ G Y + K + I+M+ A
Sbjct: 339 KSGLCGIALYG-MYPIKKTAAISMVVDA 365
>02_05_0219 + 26870970-26873117
Length = 715
Score = 23.8 bits (49), Expect(2) = 9.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 629 VGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACG 519
+G AT VID L + G+W + E+ + A G
Sbjct: 455 IGGTATSCIHVIDFDLGVGGQWASFLQELAHRRAAGG 491
Score = 22.2 bits (45), Expect(2) = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 485 ELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNATLPIG 369
+LG + S+ A G + +STG E V +LP+G
Sbjct: 526 DLGIPFEFNAVSLDAFNPGE--LISSTGDEVVAVSLPVG 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,021,385
Number of Sequences: 37544
Number of extensions: 421730
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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