Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h19r
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13) 221 4e-58
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1) 31 1.3
SB_38778| Best HMM Match : HRM (HMM E-Value=4.6) 30 1.7
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 29 2.9
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13) 29 2.9
SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012) 28 6.8
SB_19267| Best HMM Match : TIL (HMM E-Value=2.5) 28 6.8
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 28 9.0
>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
Length = 473
Score = 221 bits (541), Expect = 4e-58
Identities = 106/170 (62%), Positives = 127/170 (74%)
Frame = -1
Query: 674 GLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVIL 495
G PL R+EEI+M V GA EID+VI R VL+G ++ L+ EI M+KACG AHLK IL
Sbjct: 35 GQTPLKQRIEEIKMAVSAGAQEIDIVITRGHVLSGNYQALYEEIAAMRKACGDAHLKTIL 94
Query: 494 GVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNATLPIGLVMCRAIRRYYQMTGHKV 315
GELG+ NVYKAS++AMMAG+DFIKTSTGKEAVNAT P+ LVM RA+R YY+ TGHKV
Sbjct: 95 ATGELGSLTNVYKASLVAMMAGSDFIKTSTGKEAVNATFPVALVMVRAVRDYYERTGHKV 154
Query: 314 GLKPAGGIKTVQDTLNWLVLLYTELGPDWLTPALFRIGASSLLDVIINHL 165
G KPAGGI++ +D L WL L+ ELG +W P LFR+GASSLL I L
Sbjct: 155 GFKPAGGIRSAKDALVWLSLMKEELGDEWTHPNLFRLGASSLLGDIERQL 204
>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
Length = 301
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 499 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSISVAPYPTVIRISSNLVAR 663
+TL C P A C I L S ++ L+S T IS + + +I N R
Sbjct: 245 VTLLCYAPVAVTFCAIKLTDYDKSAIQVSLVSFTVGISSSLWNPLIYCRRNTEIR 299
>SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)
Length = 331
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 297 WNKNCSGYTELVSSFVHRAGS*LAHTCPIQDWSVQSSG 184
W+ SG LVS + + L H +QDWS SSG
Sbjct: 232 WSPTSSGCPRLVSDIKWVSKTGLRHQVGVQDWSPTSSG 269
>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 499 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSIS 612
+TL C P A C + L S ++ L+S T IS
Sbjct: 549 VTLLCYAPVAVTFCAVKLTDYDKSAIQVSLVSFTVGIS 586
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 623 YGATEIDVVIDRSLVLTGEWETLFNEIQQMKK 528
YGATE+ +V D+S T W L N I +K+
Sbjct: 253 YGATEVYMVRDQSEDFTNTWAFLDNRIADIKE 284
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +1
Query: 178 ITSRRLDAPIL------NRAGVSQSGPSSVYKRTNQFSVS*TVFIPPAGLSPT 318
I SR DAP+L N +GPS+V K ++ + T P G+SPT
Sbjct: 787 IVSRNTDAPVLKTFSTHNHLETKSAGPSTVSKMSSTYKPIETDQRPRLGISPT 839
>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
Length = 473
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 499 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSIS 612
+TL C P A C + L S ++ L+S T IS
Sbjct: 399 VTLLCYAPVAVTFCAVKLTDYDKSAIQVSLVSFTVGIS 436
>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
Length = 592
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 493 PRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSISVAP 621
P + +CADPH CC +++ + + TK S T +++P
Sbjct: 540 PYVYQKCADPHPAHQCCAGISASAGQRLGTKNRSSRTG-TISP 581
>SB_19267| Best HMM Match : TIL (HMM E-Value=2.5)
Length = 214
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = -1
Query: 563 ETLFNEIQQMKKACGSAHLKVILGVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNA 384
+ + EI + K A + + GVG L + S+ ++ +F+ +++ + A+
Sbjct: 115 QAILLEIVKRKVARKATRARCFAGVGNLVKHRRARDRSLQLLILNEEFLVSASHQLALIT 174
Query: 383 TLPIGLVMCRAIRRYYQMTG 324
+LP RRYY++ G
Sbjct: 175 SLP----FVHTARRYYRLNG 190
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 705 SGCSGYRISVWFVSSRNEIRRD 640
+GC+ + I VW +SS++E+ D
Sbjct: 24 AGCAIFAIGVWIISSKDEVAGD 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,678,449
Number of Sequences: 59808
Number of extensions: 507122
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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