Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h19r
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical p...   216   2e-56
AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear recep...    29   3.4  
AF273802-1|AAG15151.1|  353|Caenorhabditis elegans nuclear recep...    29   3.4  
AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormo...    29   3.4  
AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical
           protein F09E5.3 protein.
          Length = 303

 Score =  216 bits (527), Expect = 2e-56
 Identities = 101/177 (57%), Positives = 134/177 (75%)
 Frame = -1

Query: 713 NIQVAAVATGFPSGLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQM 534
           N  + +VA GFPSG Y L +++ E+ ++V  GATEID+VI R+  L  +W+T+ +E+   
Sbjct: 121 NSNITSVAGGFPSGQYHLKSKVLEVELSVADGATEIDIVISRASALDEDWKTVHDEVLAC 180

Query: 533 KKACGSAHLKVILGVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNATLPIGLVMCR 354
           KKACGSAHLK IL  GEL T  NVY+AS  +++AG+DFIKTSTGKE+VNATL +  VMC 
Sbjct: 181 KKACGSAHLKTILATGELKTLSNVYRASWASILAGSDFIKTSTGKESVNATLEVAYVMCT 240

Query: 353 AIRRYYQMTGHKVGLKPAGGIKTVQDTLNWLVLLYTELGPDWLTPALFRIGASSLLD 183
           AI+R++++TG KVG KPAGGIKTV + L+++ L+   LG +WL P LFRIGASSLLD
Sbjct: 241 AIKRWHELTGKKVGFKPAGGIKTVDEALSYVALVKDILGDEWLNPHLFRIGASSLLD 297


>AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/97 (24%), Positives = 38/97 (39%)
 Frame = -1

Query: 674 GLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVIL 495
           GL  +  R  E+++    G  E   +    ++   +W T F++ QQ+     S  LK + 
Sbjct: 184 GLQIIRGRKRELKLITKLGKEETLGLWQDDMMKVAKWLTYFDDFQQLSHRMRSEMLKGMW 243

Query: 494 GVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNA 384
            V        +       M+   D I T T KE V A
Sbjct: 244 KVWSRLETLALTAMGRRLMICQKDMIMTHTEKEQVMA 280


>AF273802-1|AAG15151.1|  353|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/97 (24%), Positives = 38/97 (39%)
 Frame = -1

Query: 674 GLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVIL 495
           GL  +  R  E+++    G  E   +    ++   +W T F++ QQ+     S  LK + 
Sbjct: 113 GLQIIRGRKRELKLITKLGKEETLGLWQDDMMKVAKWLTYFDDFQQLSHRMRSEMLKGMW 172

Query: 494 GVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNA 384
            V        +       M+   D I T T KE V A
Sbjct: 173 KVWSRLETLALTAMGRRLMICQKDMIMTHTEKEQVMA 209


>AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 55 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/97 (24%), Positives = 38/97 (39%)
 Frame = -1

Query: 674 GLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVIL 495
           GL  +  R  E+++    G  E   +    ++   +W T F++ QQ+     S  LK + 
Sbjct: 184 GLQIIRGRKRELKLITKLGKEETLGLWQDDMMKVAKWLTYFDDFQQLSHRMRSEMLKGMW 243

Query: 494 GVGELGTYYNVYKASMIAMMAGADFIKTSTGKEAVNA 384
            V        +       M+   D I T T KE V A
Sbjct: 244 KVWSRLETLALTAMGRRLMICQKDMIMTHTEKEQVMA 280


>AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical
           protein Y20C6A.3 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 528 SMRICTSQSYSWRWRIGNLL*CVQSFNDRH 439
           S R      Y WRW +  +  C+Q +  RH
Sbjct: 260 SCRSEVGMCYGWRWDVSQVPSCLQDYGSRH 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,607
Number of Sequences: 27780
Number of extensions: 383055
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)