Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h19r
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    28   0.079
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 0.079
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 412 HRPAKKP*TQRYPLVLSCVGLL 347
           +RP + P TQR P VLS +G++
Sbjct: 367 YRPGENPVTQRLPAVLSRIGII 388


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 484 SPTPRITLRCADPHAFFICCISLNSVSHSPVK 579
           +PT R+   C       IC   + ++SH+ +K
Sbjct: 203 TPTERLEALCWTQDEDIICSTPIGNLSHALLK 234


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 443 AMMAGADFIKTSTGKEAVNATLPIGLVMCRAIRRY 339
           A + G  +       + V+ TLP+ L +  AIR Y
Sbjct: 659 ANIEGTSYFLNDYKHKDVDVTLPLDLHIQNAIREY 693


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 484 SPTPRITLRCADPHAFFICCISLNSVSHSPVK 579
           +PT R+   C       IC   + ++SH+ +K
Sbjct: 150 TPTERLEALCWTQDEDVICSTPIGNLSHALLK 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,060
Number of Sequences: 438
Number of extensions: 4658
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)