Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h19r
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO...    29   4.2  
At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    28   5.6  

>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to p300/CBP acetyltransferase-related protein
           (GI:12597461) [Arabidopsis thaliana];  similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 364

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 678 RKSCSHCSHLYVFFQLHS 731
           R SCSHC  ++   QLHS
Sbjct: 290 RASCSHCKRMWQLLQLHS 307


>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 556 CLMKYNK*RKHADLHISKL-FLALANWELIIMCTKLQ 449
           C    N  +K+  LH+  +  +  + WEL+ MC K++
Sbjct: 218 CSFDLNMNKKYTRLHLRNIPMMPQSEWELLAMCIKIE 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,863
Number of Sequences: 28952
Number of extensions: 352616
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)