Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h19f
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 29 0.79
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 27 2.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.2
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 5.6
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 5.6
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 7.4
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 9.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 9.7
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 9.7
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 28.7 bits (61), Expect = 0.79
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Frame = +2
Query: 89 TIDDMPLDNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAI-----TLIDLTTL-SGD 250
T++ P+D T + VDS +S +V K+ R W +K L DL TL
Sbjct: 180 TVNWDPVDCTVLANEQVDSHGRSWRSGAIVEKKNLRQWFLKISDYSDQLLDDLETLPKWP 239
Query: 251 DTSSNVRR--LCRKAAYPIPIDIMNPSDNLHTAAVCVYPTKVPDVCTALKAMKLEKN 415
D ++R + R + I ++N + L V+ TK P+ + + L KN
Sbjct: 240 DKVKKMQRNWIGRTTGFEISFPLLNDKETL-----TVFTTK-PETIIDVSFIALSKN 290
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 567 VSHSPVKTKLLSITTSISVAPYPTVIRISSNLVARGYKPDGNPV--ATAATCMFFSNFIA 394
++ S T L SIT+S ++ TV ISSNL + +T AT ++ S+ +
Sbjct: 742 ITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSS-SS 800
Query: 393 FRAVHTSGT 367
R + TS T
Sbjct: 801 SRTISTSST 809
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 642 SPTPRITLRCADPHAFFICCISLNSVSHSPVKTKLLSI 529
+P+ RIT+ H F + C SL+S+ + T LSI
Sbjct: 242 NPSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSI 279
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 243 ESVVKSIRVIAFISHALSSLGDTTLLYNIDFT-*ESTLLLFINVLSKGISSIVSKIARTI 67
E + +IR++ F+S + +LGDT L Y T +L + ++ + + K
Sbjct: 248 ELSLDAIRIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKCKNFSNDLSDKYQNIR 307
Query: 66 SWISKLLLKFYFLNCV 19
W+S + Y+ CV
Sbjct: 308 LWVSVWQWEGYWSFCV 323
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVDSQVKSI-----LYNNVVSPKDERAWLMKAITL 223
+H++++A+F + D P D + + V S + I + +V++PK+ ++ A +
Sbjct: 1194 LHDILKALFFILKDTPTDYGVLKLTEVRSFIVDITTQFCILQDVLAPKERANNIINAFSP 1253
Query: 224 IDLTTLSGDDTSSN 265
L L +D N
Sbjct: 1254 FFLELLHPNDHVRN 1267
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +2
Query: 17 ITQFKK*NLSKSFEIH----EMVRAIFETIDDMPLDNTFINKSNVDSQVKSILYNNVVSP 184
+ F + LS E H + ++ I TI +PL+ + + S +++IL N P
Sbjct: 215 VINFIRRTLSIQSETHVKNIDSLQQIVPTIPHLPLNLVQLKITPEISAIRTILINKNTHP 274
Query: 185 KDERAWLMKAITLIDLTTLSGD 250
D + +L + T+ L L+GD
Sbjct: 275 DDLQFFLSRIGTM--LMNLAGD 294
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 261 DDVSSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLSKGISSIVSK 82
+D + P VV + + S AL + + L +D L + +L + + +
Sbjct: 591 EDTTFPMRVVNY--ALEYSSKALDKFAENSHLILLDMVDVGKPDLVLTLLCRWLHMVHLY 648
Query: 81 IART--ISWISKLLLKFYFLN 25
+RT SWI + KFYF++
Sbjct: 649 SSRTSITSWIYSIASKFYFID 669
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 391 EGYEVGKKHTSGCSGYRISVWFVSSRNEIRRDS 489
E E+ KK S + + +WF + R +RR +
Sbjct: 62 ERQELSKKLKSSMTPRELQIWFQNKRQSLRRSN 94
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 9.7
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Frame = -3
Query: 583 YFIKQCLPFSGQN*TPIDNHINFCCT------------IPYGHPNLF*SRCERIQTRRKS 440
Y + LPF + P N + CC +P+ LF S +R+ +
Sbjct: 109 YMLDLLLPFFTLDLLPFLNKVCECCNHMLLDNPKIKQDLPFAFCYLFSSYFSYKSSRQYT 168
Query: 439 CSHCSHLYVFFQLHSLQSSTYIRHL 365
CS VF L+ L S Y+ HL
Sbjct: 169 CSSEEISKVFRHLNRLGGSEYVLHL 193
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 541 TPIDNHINFCCTIPYGHPNL 482
+P N+ CCT +GHP++
Sbjct: 122 SPSTNNALCCCTTVHGHPHM 141
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 71 VRAIFETIDDMPLDNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGD 250
V + + I + + TF+ K N+ S+V + K + L+ + I L T+SG
Sbjct: 364 VLIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLI--LMDIQLPTMSGI 421
Query: 251 DTSSNVRRLCR 283
+ + +RRL R
Sbjct: 422 EVTQEIRRLER 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,521
Number of Sequences: 5004
Number of extensions: 56601
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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