Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h19f
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)                  83   3e-16
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)                      31   1.1  
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)                 29   2.6  
SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)           28   5.9  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   5.9  
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                28   7.8  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.8  

>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
          Length = 473

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/70 (55%), Positives = 48/70 (68%)
 Frame = +2

Query: 452 GLYPLATRLEEIRMTVGYGATEIDVVIDRSLVLTGEWETLFNEIQQMKKACGSAHLKVIL 631
           G  PL  R+EEI+M V  GA EID+VI R  VL+G ++ L+ EI  M+KACG AHLK IL
Sbjct: 35  GQTPLKQRIEEIKMAVSAGAQEIDIVITRGHVLSGNYQALYEEIAAMRKACGDAHLKTIL 94

Query: 632 GVGELGTYYN 661
             GELG+  N
Sbjct: 95  ATGELGSLTN 104


>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
          Length = 301

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 627 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSISVAPYPTVIRISSNLVAR 463
           +TL C  P A   C I L     S ++  L+S T  IS + +  +I    N   R
Sbjct: 245 VTLLCYAPVAVTFCAIKLTDYDKSAIQVSLVSFTVGISSSLWNPLIYCRRNTEIR 299


>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 627 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSIS 514
           +TL C  P A   C + L     S ++  L+S T  IS
Sbjct: 549 VTLLCYAPVAVTFCAVKLTDYDKSAIQVSLVSFTVGIS 586


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 503 YGATEIDVVIDRSLVLTGEWETLFNEIQQMKK 598
           YGATE+ +V D+S   T  W  L N I  +K+
Sbjct: 253 YGATEVYMVRDQSEDFTNTWAFLDNRIADIKE 284


>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
          Length = 473

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 627 ITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSIS 514
           +TL C  P A   C + L     S ++  L+S T  IS
Sbjct: 399 VTLLCYAPVAVTFCAVKLTDYDKSAIQVSLVSFTVGIS 436


>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
          Length = 592

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 633 PRITLRCADPHAFFICCISLNSVSHSPVKTKLLSITTSISVAP 505
           P +  +CADPH    CC  +++ +   + TK  S  T  +++P
Sbjct: 540 PYVYQKCADPHPAHQCCAGISASAGQRLGTKNRSSRTG-TISP 581


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -1

Query: 108 KGISSIVSKIARTISWISKLLLKFYFLNCVISMI 7
           KG+ ++V+ + R++  ++ +L+ F F  CV+++I
Sbjct: 199 KGLRAMVNSLLRSLKLLTDVLVLFLFSLCVLALI 232


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 421 SGCSGYRISVWFVSSRNEIRRD 486
           +GC+ + I VW +SS++E+  D
Sbjct: 24  AGCAIFAIGVWIISSKDEVAGD 45


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 24.6 bits (51), Expect(2) = 7.8
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 224 IDLT-TLSGDDTSSNVRRLCRKAAYPIPIDIMNPS 325
           +DL+ ++ GD++ S  R   R+AA  +P+ ++N S
Sbjct: 605 LDLSMSVPGDESLSPNRMRGRRAAISLPVKLLNSS 639



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 86  ETIDDMPLD 112
           E++DDMPLD
Sbjct: 598 ESVDDMPLD 606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,459,298
Number of Sequences: 59808
Number of extensions: 421191
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)