Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h19f
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical p... 142 2e-34
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 34 0.10
U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 3.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 3.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 3.9
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 28 5.1
AL110485-25|CAB60373.1| 672|Caenorhabditis elegans Hypothetical... 28 6.8
Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 27 9.0
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 27 9.0
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 27 9.0
>U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical
protein F09E5.3 protein.
Length = 303
Score = 142 bits (345), Expect = 2e-34
Identities = 78/159 (49%), Positives = 103/159 (64%)
Frame = +2
Query: 185 KDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDIMNPSDNLHTAAVCVYPT 364
KDE + K I IDLTTL+GDDT+S V L ++A P+P D PS +H +VCVYP
Sbjct: 55 KDE---IRKVIQYIDLTTLNGDDTASKVVALAKRAINPVPTD---PS--IHCGSVCVYPQ 106
Query: 365 KVPDVCTALKAMKLEKNIQVAAVATGFPSGLYPLATRLEEIRMTVGYGATEIDVVIDRSL 544
++ DV L + KL NI +VA GFPSG Y L +++ E+ ++V GATEID+VI R+
Sbjct: 107 RIADVKKFLASSKLNSNI--TSVAGGFPSGQYHLKSKVLEVELSVADGATEIDIVISRAS 164
Query: 545 VLTGEWETLFNEIQQMKKACGSAHLKVILGVGELGTYYN 661
L +W+T+ +E+ KKACGSAHLK IL GEL T N
Sbjct: 165 ALDEDWKTVHDEVLACKKACGSAHLKTILATGELKTLSN 203
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 33.9 bits (74), Expect = 0.10
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +2
Query: 149 VKSILYNNVVS-PKDERA----WLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDI 313
V SIL N V + KD +A +L+KAI + + + DDT + + K A +
Sbjct: 532 VSSILQNLVTAFDKDAKAQNSPYLIKAI--LRIIVILDDDTIRHADAIAVKLAQLVESAT 589
Query: 314 MNPSDNLHT----AAVCVYPTKVPDVCTALKAMKL 406
NP+D++HT +CV TK + +L A L
Sbjct: 590 KNPADSVHTHFLFETICVLITKTRTIGASLDAQLL 624
>U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical
protein K06C4.9 protein.
Length = 492
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 141 STLLLFINVLSKGISSIVSKIARTISWISKLLLKFYFLNCVISMIL 4
+T L FIN++SK + + R I IS LLL Y + V ++
Sbjct: 391 NTTLKFINMVSKTYAQFRFPVIRVIHHISNLLLVIYSASTVFIYLI 436
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +2
Query: 110 DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 289
D T I K D + K + + V P D + +T+ D TL DDT V +
Sbjct: 2823 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2879
Query: 290 AYPIPIDIMNP 322
P+P D P
Sbjct: 2880 GTPLPTDASGP 2890
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +2
Query: 110 DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 289
D T I K D + K + + V P D + +T+ D TL DDT V +
Sbjct: 2868 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2924
Query: 290 AYPIPIDIMNP 322
P+P D P
Sbjct: 2925 GTPLPTDASGP 2935
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +2
Query: 110 DNTFINKSNVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKA 289
D T I K D + K + + V P D + +T+ D TL DDT V +
Sbjct: 2868 DGTIIAK---DDEGKPLGPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTGKTVYPIRGPD 2924
Query: 290 AYPIPIDIMNP 322
P+P D P
Sbjct: 2925 GTPLPTDASGP 2935
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 229
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1267 VEEVFGAVIDPTTSYPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1322
>AL110485-25|CAB60373.1| 672|Caenorhabditis elegans Hypothetical
protein Y46G5A.31 protein.
Length = 672
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 275 LCRKAAYPIPIDIMNPSDN--LHTAAVCVYPTKVPDVCT 385
+C + P P ++M+P+DN L + ++ + +P +CT
Sbjct: 429 ICLQGHLPEPEELMSPADNILLKRCIMSLHNSSLPPICT 467
>Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical
protein ZK262.9 protein.
Length = 231
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 376 CMYCSEGYEVGKK-HTSGCSGYRISVWFVSSRNEIRRDSDDRRVWC 510
C C Y + + H GC+G ++ + +R + D++ V+C
Sbjct: 80 CDLCLLSYVISEDGHHKGCTGLNVTCKYCLARPDFAYDAEHNEVFC 125
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 229
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1141 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1196
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 229
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1247 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1302
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 229
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1247 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1302
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 IHEMVRAIFETIDDMPLDNTFINKSNVD-SQVKSILYNNVVSPKDERAWLMKAITLID 229
+ E+ A+ + P DN + NVD +Q+ ++N +V +ER +L + +++
Sbjct: 1146 VEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVG--EERIYLSRDEVIVE 1201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,388
Number of Sequences: 27780
Number of extensions: 322670
Number of successful extensions: 1032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -