Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h19f
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 30 1.6
At5g23930.1 68418.m02810 mitochondrial transcription termination... 29 2.1
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 2.1
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 2.1
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO... 29 3.6
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com... 28 4.8
At2g41470.1 68415.m05123 embryo-specific protein-related similar... 28 4.8
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si... 28 6.4
At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id... 27 8.4
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id... 27 8.4
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 29.9 bits (64), Expect = 1.6
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Frame = +2
Query: 134 NVDSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDI 313
++ SQ +S ++ + PK + A + +A+ L LT D TSS ++A P +
Sbjct: 31 SIPSQTRSF-HSTICRPKAQSAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSV 89
Query: 314 MNPSDNLHTAAVCVYPTKVPDVC--TALKAMKLEKNIQVAAVATGFPSGLYPLATRLEEI 487
DN V T P + T ++M+L ++ V + L PL EI
Sbjct: 90 DESWDNFFRNFVGQAATS-PGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEQREI 148
Query: 488 RMTVG---YGATEIDVVIDRSLVLTGEWE 565
+ YG TE D +DR L G W+
Sbjct: 149 PEDLDLALYGFTEAD--LDREFFL-GVWQ 174
>At5g23930.1 68418.m02810 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = -1
Query: 264 FDDVSSPESVVKSIRVIAFISHALSSLGDTTLLYNIDFT*ESTLLLFINVLS-KGISSIV 88
FD+ +P+SV+K +R F +SS+ T + I+ E TL ++ L G SS
Sbjct: 81 FDEKGNPDSVLKLLRSYGFKDSQISSIISTYPRFLIE-NPEKTLRAKLHFLKLNGASS-- 137
Query: 87 SKIARTISWISKLLLK 40
S++ +S + K+L K
Sbjct: 138 SELTEIVSKVPKILGK 153
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 4706
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 140 DSQVKSILYNNVVSPKDERAWLMKAITLIDLTTLSGD 250
DS+ K + +V SP ++ W +A+ + T++SGD
Sbjct: 245 DSEPKKLYSCSVSSPNNDTVWHRQAVLRLSKTSISGD 281
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 176 VSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDIMNPSDNLH 337
+ P+D +A++ LI T + D R L +K +PI+++N LH
Sbjct: 167 LDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALH 220
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 176 VSPKDERAWLMKAITLIDLTTLSGDDTSSNVRRLCRKAAYPIPIDIMNPSDNLH 337
+ P+D +A++ LI T + D R L +K +PI+++N LH
Sbjct: 379 LDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALH 432
>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to p300/CBP acetyltransferase-related protein
(GI:12597461) [Arabidopsis thaliana]; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 364
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 448 RKSCSHCSHLYVFFQLHS 395
R SCSHC ++ QLHS
Sbjct: 290 RASCSHCKRMWQLLQLHS 307
>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
component family protein similar to ferric-chelate
reductase (FRO1) [Pisum sativum] GI:15341529; contains
Pfam profile PF01794: Ferric reductase like
transmembrane componenent
Length = 738
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 117 VLSKGISSIVSKIARTISWISKLLLKFYFLNCVISMILI 1
+LSK SS S I ++ WI K+++ F+ V+ ++++
Sbjct: 8 LLSKDSSSSSSVITSSLKWILKVVMSMIFVTWVVFLMMM 46
>At2g41470.1 68415.m05123 embryo-specific protein-related similar to
embryo-specific protein 3 (ATS3) [Arabidopsis thaliana]
GI:3335171
Length = 365
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 296 PIPIDIMNPSDNLHTAAVCVYPTKVPDVCTAL 391
P+PID P L AA C Y + C+++
Sbjct: 30 PLPIDSFIPKPKLENAAACSYTVIIKTSCSSV 61
>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
similar to kinesin heavy chain isolog GB:AAB63609
GI:2262101 from [Arabidopsis thaliana]
Length = 974
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 279 QSLLTFDDVSSPESVVKSIRVIAFISHALSSL-GDTTLLYNIDFT*ESTLLLFINVLSKG 103
QS TFD V PES+ +++ + ALS+L G ++ T V K
Sbjct: 75 QSSFTFDKVFGPESLTENVYEDGVKNVALSALMGINATIFAYGQTSSGKTYTMRGVTEKA 134
Query: 102 ISSIVSKIART 70
++ I + I +T
Sbjct: 135 VNDIYNHIIKT 145
>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 513 VAPYPTVIRISSNLVARGYKPDGNPVATAATCMFFSNFIAFRAVHTSG 370
V P + +R + + Y+PD N +T C F N FR V T+G
Sbjct: 74 VNPERSTLRSQALTMGATYQPDWNAGSTLLICA-FPNTPKFRQVETNG 120
>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
identical to putative DNA repair protein XRCC1
[Arabidopsis thaliana] GI:11181954; contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 353
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 513 VAPYPTVIRISSNLVARGYKPDGNPVATAATCMFFSNFIAFRAVHTSG 370
V P + +R + + Y+PD N +T C F N FR V T+G
Sbjct: 74 VNPERSTLRSQALTMGATYQPDWNAGSTLLICA-FPNTPKFRQVETNG 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,281
Number of Sequences: 28952
Number of extensions: 287993
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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