Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h18r
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.9  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    25   6.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.9  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   9.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 157  YCYKTQAHGVDLRSWYTASNYIHCIS--VCLIIRCSHHLQAXI 279
            YCY+   +   ++SW +  +YI+     +C  +  + +L++ I
Sbjct: 2005 YCYEGPINNYMIKSWGSRLSYIYAFKPLICSCVPATEYLESNI 2047


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 474 FSITSVINLVAXESCFYQRCLGCYPQEM 391
           F +T  I  +A  SC +  CL  +P+E+
Sbjct: 257 FQVTGEIMKLAKPSCKFMHCLPRHPEEV 284


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 187  DLRSWYTASNYIHCISVCLIIRCSHHLQAXI-FYW 288
            +L  + +A++ I C+++ +  +C  HL + +  YW
Sbjct: 1386 NLMDYSSATDRIRCLAIHIYYQCLRHLSSSVRSYW 1420


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -3

Query: 426 YQRCLGCYPQEMISAGSLVECHPRNWVSAQWV----LNYGHPPPSTDSRIP 286
           +++  GC P  + + G ++     N +   W+    + YG  P   D++ P
Sbjct: 186 FEKAAGCLPDPLSAGGGVIVVGWLNTIHMDWLRTGSMLYGLDPYDLDAKAP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,669
Number of Sequences: 5004
Number of extensions: 49187
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)