Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h18r
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   3.1  
10_01_0164 + 1863890-1866253                                           28   5.4  
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    28   5.4  
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563...    28   5.4  
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    28   7.1  

>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 207 CIPRAQIDSVCLGLIAVEKARGHSDVRCFI 118
           CIP+  +D++CL    ++  + H+ +RCF+
Sbjct: 522 CIPQC-LDALCLNSSGLQLVKDHNALRCFV 550


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 402 PQEMISAGSLVECHPRNWVSAQW 334
           P  +I  GSLV+ HP  W+  +W
Sbjct: 274 PCRVICKGSLVKKHPATWLEFEW 296


>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 483 LFIFSIT-SVINLVAXESCFYQRCLGCYPQEMISAGSL 373
           L+I+ ++ S   L +  +CFY+ CL  YP   ++   L
Sbjct: 781 LYIYKVSESADRLPSSHTCFYRLCLPAYPSLKVTRNQL 818


>04_04_0579 -
           26355431-26355684,26355988-26356073,26356292-26356377,
           26356596-26356788,26356895-26357094,26359257-26359379
          Length = 313

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 408 CYPQEMISAGSLVECHPRNWVSAQWVLNYGHPPPSTDSRIPIEYXCLKMVATPDDKTYGN 229
           CY    +S  S +E  P +W+S  W    GH P      +   +     ++T +D+T  +
Sbjct: 177 CYNFPPLSYLSSIELSPSSWMSVFW-YPIGHVPAMNKKDLTTCFLTYHSLSTLEDRTPFD 235

Query: 228 TMD 220
           + D
Sbjct: 236 SKD 238


>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 249 DDKTYGNTMDVIRGCIPRAQIDSVCLGLIAVEK 151
           D+  Y  ++  I GC+ ++    VC GL+  EK
Sbjct: 229 DEDVYNGSLSHILGCVAKSLESLVCKGLVNKEK 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,068
Number of Sequences: 37544
Number of extensions: 313999
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)