Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h18r
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019)             30   1.4  
SB_12794| Best HMM Match : rve (HMM E-Value=8.4e-16)                   29   2.4  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   5.5  
SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)                  27   9.6  

>SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019)
          Length = 409

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +1

Query: 79  LKTRXRIAAVSVANKTPHVAM--SSCFFYCYKT-QAHGVDLRSWYTASNYIHCISVCLII 249
           LKT   + A+ V +K    A+  S+C  + Y +  +   D +S Y    Y   IS+CL++
Sbjct: 256 LKTNVALTALEVDSKNGLFAVRYSACLRFVYGSLHSRFYDTKSLYN-QGYTPHISLCLVV 314

Query: 250 RCSHHLQAXIF 282
            C++   + +F
Sbjct: 315 NCAYRDLSDMF 325


>SB_12794| Best HMM Match : rve (HMM E-Value=8.4e-16)
          Length = 252

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 357 RNWVSAQWVLNYGHPPPST----DSRIPIEYXCLKMVATPDDKTYGNTMDVI 214
           R WVS+Q V  Y  PPP+T      +IP       ++  P D+ Y   + V+
Sbjct: 46  RKWVSSQPVGGYTPPPPTTYAHFSEQIPNRIHQSDLLFLPTDRGYKYALTVV 97


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 412  WLLSTRNDFSWLVSRVSPKKLGVGPMGSKLWSPA 311
            W  S  +DF W  +R +   LG GPM    +  A
Sbjct: 2143 WTQSMGDDFDWTRARGATASLGTGPMTDHTYGTA 2176


>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 486 ILFIFSITSVINLVAXESCFYQRCLGCYPQE 394
           ++ +FS  +VI+++A + CF  R L   P++
Sbjct: 7   VVVLFSSVTVISVIATDPCFESRYLQAVPKD 37


>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
          Length = 867

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 546 SQHNFYHTNRQGXMFYLLVRTVIT 617
           + H F  T+R+G   Y+L+R VIT
Sbjct: 793 ADHTFSKTDREGYEVYVLLRNVIT 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,402
Number of Sequences: 59808
Number of extensions: 371581
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)