Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h14r
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49960.1 68418.m06186 expressed protein ; expression supporte...    32   0.33 
At4g05260.1 68417.m00795 ubiquitin family protein contains INTER...    29   2.4  
At2g28870.1 68415.m03509 expressed protein                             29   4.1  
At1g53840.1 68414.m06128 pectinesterase family protein contains ...    29   4.1  
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    28   5.5  
At3g22170.1 68416.m02798 far-red impaired responsive protein, pu...    27   9.5  
At1g52040.1 68414.m05871 jacalin lectin family protein nearly id...    27   9.5  

>At5g49960.1 68418.m06186 expressed protein ; expression supported
           by MPSS
          Length = 824

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 255 CLDDACSHSYAYVFYAESIRQAVDGGNEFVGTACNSYEEARNLRCSGPRDAIFGGIEVKE 76
           CL   CS S+ YV +  S    ++  N  + T CNS  +   +  +  R  +F  + +  
Sbjct: 86  CLKFICSCSFTYVMFLRSKVSRLEAENIILLTRCNSSSDNNEMEETNSRAVVFFSVIITF 145

Query: 75  V-EMGIYIFLTNI 40
           V    +Y++L ++
Sbjct: 146 VLPFLLYMYLDDL 158


>At4g05260.1 68417.m00795 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 259

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 619 PVDGDYVYIFSGEVSGYDESVEVSSDXFTVIV 714
           P DGDY ++  G V   D+S E +S   T IV
Sbjct: 219 PQDGDYFFVHKGRVLNEDQSFEWNSVAHTDIV 250


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 446 EFLAAIPAMCPPRPSPTMRISSES*LKV 529
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At1g53840.1 68414.m06128 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 586

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -3

Query: 317 VMTILWEISTFIPPAVAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSELLAIATKK 138
           V+ ++  I   +   V  K    + P+P   P   TP+ S K    V    E    +  K
Sbjct: 36  VVVLIAVIIAAVVATVVHKNKNESTPSP---PPELTPSTSLKAICSVTRFPESCISSISK 92

Query: 137 LATSDALDPETPFSVELKL 81
           L +S+  DPET F + LK+
Sbjct: 93  LPSSNTTDPETLFKLSLKV 111


>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 272 VAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSELL 156
           V V+ D WT    I+TP F+  NL     M V S S +L
Sbjct: 154 VMVEGDDWTRHRHIITPAFAPLNLKVMTNMMVESVSNML 192


>At3g22170.1 68416.m02798 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 839

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = -2

Query: 414 DPSLHGWTHNPEILNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACS 235
           D  L    HN E ++      V V   T   +G   P G+L  Y  G + +     +  S
Sbjct: 19  DRGLDNVLHNEEDMDIGKIEDVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFES 78

Query: 234 HSYAYVFYAESIR 196
           H  AY FY E  R
Sbjct: 79  HGEAYSFYQEYSR 91


>At1g52040.1 68414.m05871 jacalin lectin family protein nearly
           identical to myrosinase-binding protein homolog
           GI:2997767 from [Arabidopsis thaliana]; contains Pfam
           profile PF01419 jacalin-like lectin domain; identical to
           cDNA myrosinase-binding protein homolog  GI:2997766
          Length = 462

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 2   KIYSSQSLANGGLMFVKNMYIPISTSLTSIPPKMASLG 115
           KI S    A+  L  V   + PIS+SLT+ P K+ + G
Sbjct: 127 KIISFHGFADSHLNSVGAYFAPISSSLTTTPNKVEAQG 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,373
Number of Sequences: 28952
Number of extensions: 303153
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)