Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h14f
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   9e-08
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      52   5e-07
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  39   0.003
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            38   0.005
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    31   1.00 
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   3.0  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   4.0  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   5.3  
SB_54729| Best HMM Match : Sprouty (HMM E-Value=4.4e-11)               28   7.0  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
 Frame = +3

Query: 261  AHLAAEDVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINILTTTFSYDSELIRIVXX 437
            A +  ED NVI  DWS G+ + Y +  AN R  G  I E I  L            +V  
Sbjct: 635  ALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYLVGF 694

Query: 438  XXXXXXXXXXXRN---SNQPIPHIIALDP-SLHGWTHNPEI-LNPDDANIVEVLHTTAGL 602
                       R    + Q +  I  LDP S+H    + ++ L+P DA+ V+V+HT   L
Sbjct: 695  SLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMHTDMDL 754

Query: 603  IG 608
             G
Sbjct: 755  AG 756


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
 Frame = +3

Query: 99  FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNH-GETVAG------NFNAFVI 257
           F L+ R SP   + L   ++    + F+ +RRT+  IH   G T         N+  F +
Sbjct: 75  FMLYTRESPVQYQQLYEDMDITRDTHFNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPM 134

Query: 258 PAHLAAE-DVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 431
              L  E D NVI VDW  G+   +T  +AN R  G   A  + IL          + ++
Sbjct: 135 KNELLWEGDFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQILEERSGRKLAYVHVI 194

Query: 432 XXXXXXXXXXXXXR---NSNQPIPHIIALDPSLHGW-THNPEI-LNPDDANIVEVLHTTA 596
                        R      + I  I ALDP+   +  H+ ++ L+  DA  V+V+HT+A
Sbjct: 195 GFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAMWFHKHHEDVRLDTSDALFVDVIHTSA 254


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 99  FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAE 278
           F LF R  P +       V  +  S++   +RT    H + E+ + ++   +  A L  +
Sbjct: 72  FQLFTRSHPHLVSIDDSDVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKD 131

Query: 279 DVNVIAVDWSPGSK-LYTEGLANARQCG 359
           DVNV+  DW PG+  +Y +  AN R  G
Sbjct: 132 DVNVVITDWGPGADGMYWQATANTRLVG 159


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +3

Query: 135 EPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAEDVNVIAVDWSPG 314
           +P  L+ NS   ++F   R+ +  IH   ++   ++   +    L  E +NVI VDW  G
Sbjct: 8   DPKRLARNS---TAFRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSG 64

Query: 315 S---KLYTEGLANARQCGRLIAEFINILTTTFSYDSELIRIV 431
           +    LY     N R  G  +AE I  +   F +D   + ++
Sbjct: 65  ADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLI 106


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 16/179 (8%)
 Frame = +3

Query: 105 LFHRGSPQVSEPLL-LSVNSIMTSSFSLARRTIFTIHNHGET--------VAGNFNAFVI 257
           L+ + SP   E L      +I  SSF   R T F +H +           + G +   + 
Sbjct: 57  LYTQASPDKYEVLSDADTATIEKSSFLPHRTTRFIVHGYAGLDSVDSIIDLKGWWGIRMK 116

Query: 258 PAHLAAEDVNVIAVDWSPGSKL-YTEGLANARQCGRLIAEFI-NILTTTFSYDSELIRIV 431
              L   D NVI VDW  G+K+ Y   +AN R  G  +A F+  IL+ + S +      +
Sbjct: 117 DELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFHSI 176

Query: 432 XXXXXXXXX---XXXXRNSNQPIPHIIALDP-SLHGWTHNPEI-LNPDDANIVEVLHTT 593
                           +   + +  I  LDP +L      P++ L+  DA  V+V+HT+
Sbjct: 177 GFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIHTS 235


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 513 PSLHGWTHNPEILNPDDANIVEVLHTTAGLIGY 611
           PSL    H P IL PD A    VL  ++G+ GY
Sbjct: 568 PSLVTPAHQPWILQPDPAKASRVLEDSSGIKGY 600


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 476 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 345
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 501 IALDPSLHG--WTH-NPEILNPDDANIVEVLHTTAGLIG 608
           +A   +LHG  W   +P+IL+ D A+  ++LH TAG +G
Sbjct: 875 VATRAALHGVKWPPTSPKILSVDFADDKQMLHDTAGALG 913


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 93  VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 230
           VV+H    +FH+  P V++P+L S +S +    ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


>SB_54729| Best HMM Match : Sprouty (HMM E-Value=4.4e-11)
          Length = 308

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 584 QDFYDVSIVRIENFRVVSPTVERWVQSNNVRNRL-V*ISSCDTSDVSTETKSDN 426
           +++Y   I R +NF+++ P + + ++ +N+  ++ V +S C       +T  D+
Sbjct: 48  EEYYPFVIGRGKNFKIIDPKLFKQLRKHNIHQKVPVWVSDCAKKTSLDKTVGDS 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,963,089
Number of Sequences: 59808
Number of extensions: 359823
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)