Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h14f
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +3

Query: 66  YSFNLGERDVVFHLFHRGSP-QVSEPLLLSVNSIMTSSFSLARRTIFTIHNH----GETV 230
           Y  ++ ER+VV  +    +P +     +  +N+I  S    A + +   HNH     + +
Sbjct: 292 YFMSVTEREVVHGILKVKNPNEHCLCYIRHINNIALSQMKTASKFVDIAHNHVNSEAQKL 351

Query: 231 AGNFNAFVIPAHLAAEDVNVIAVDW 305
             N     +PA LA +++    V+W
Sbjct: 352 LANLRDERVPAKLAMQNIRRSTVEW 376


>Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical
           protein AC3.10 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  KCTDWLSVRCYCALLLQRTVSIWENGMLYFTSFIGEALRS 132
           K T W+  RC   LL  + + +W +  +Y T  IG  ++S
Sbjct: 19  KITGWILTRCLNVLLFIQLILLWWSLYMYVTVTIGYYVQS 58


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 11  ENVRTG*VCAVTVRCYCSVQFQFGRTGCCISPLSSGKPSGQ*TVVAVCQLYYDF 172
           ++V+T  +  +++ C   V+  F     CIS +   KPS   ++V    LY D+
Sbjct: 132 KDVKTS-ISMLSLSCSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLSLYLDY 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,057
Number of Sequences: 27780
Number of extensions: 261127
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)