Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h14f
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    38   0.005
At4g05260.1 68417.m00795 ubiquitin family protein contains INTER...    30   1.1  
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At2g28870.1 68415.m03509 expressed protein                             29   3.3  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    28   4.3  
At1g54430.1 68414.m06209 hypothetical protein                          28   5.7  
At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger) fa...    27   7.6  

>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = -2

Query: 473  SSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTSVGQTLGV*FRSRTPVDG 294
            S+ D S++++E KSD+AN+  I AE  + + D+    S   T  GQ       S+    G
Sbjct: 758  SAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVE----TSKNDEKG 813

Query: 293  DYVYIFSGEVS-GYDESVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQR 138
              +      V+ G++++ +  +DS        D   S+G++     V  QQQR
Sbjct: 814  APIANEKSSVADGFEKASDAKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQR 866


>At4g05260.1 68417.m00795 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 259

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 305 PVDGDYVYIFSGEVSGYDESVEVSSDSFTVIV 210
           P DGDY ++  G V   D+S E +S + T IV
Sbjct: 219 PQDGDYFFVHKGRVLNEDQSFEWNSVAHTDIV 250


>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 222 HRDCVS*RWCGERGRT 175
           HRDC+  RWC E+G T
Sbjct: 46  HRDCIQ-RWCDEKGNT 60


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 478 EFLAAIPAMCPPRPSPTMRISSES*LKV 395
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 138 PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 260
           PL+L+ NSI   S  +AR ++FT  N G ++  NF+   +P
Sbjct: 34  PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 66  YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 155
           +S N+GERDV+ H    G  Q+S+  PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522


>At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING
          Length = 218

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 222 HRDCVS*RWCGERGRT 175
           HR+C+  RWC E+G T
Sbjct: 46  HRNCIQ-RWCNEKGNT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,845
Number of Sequences: 28952
Number of extensions: 242347
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)