Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h12r
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   247   6e-66
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   239   1e-63
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   215   2e-56
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.38 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    31   1.2  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.0  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   4.7  
At2g34150.1 68415.m04180 expressed protein                             29   4.7  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    29   4.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  247 bits (605), Expect = 6e-66
 Identities = 112/180 (62%), Positives = 140/180 (77%), Gaps = 1/180 (0%)
 Frame = -2

Query: 796 RADGTHVINXRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAG 617
           R DG ++ N  +TWEKL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAG
Sbjct: 46  RNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAG 105

Query: 616 RFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 437
           R TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVDI I
Sbjct: 106 RHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGI 165

Query: 436 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQ 260
           P N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ +DE +A  Q
Sbjct: 166 PANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  239 bits (586), Expect = 1e-63
 Identities = 107/178 (60%), Positives = 136/178 (76%)
 Frame = -2

Query: 796 RADGTHVINXRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAG 617
           R DG ++IN  +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG   IAG
Sbjct: 47  RDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAG 106

Query: 616 RFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 437
           R TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI I
Sbjct: 107 RHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGI 166

Query: 436 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 263
           P N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++++  +  E
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  215 bits (526), Expect = 2e-56
 Identities = 97/159 (61%), Positives = 121/159 (76%)
 Frame = -2

Query: 796 RADGTHVINXRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAG 617
           R DG ++IN  +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG   IAG
Sbjct: 47  RDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAG 106

Query: 616 RFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAI 437
           R TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVDI I
Sbjct: 107 RHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGI 166

Query: 436 PCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 320
           P N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 167 PANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 565 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 416
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 285 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 172
           +++++PR+R W QLN K L LS     K   + L+GLK
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 610 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 509
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 469 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 332
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 437 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 607
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 782 PCDQXASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 660
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,354
Number of Sequences: 28952
Number of extensions: 360225
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)