Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h12f
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   245   2e-65
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   239   1e-63
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   239   1e-63
At2g22340.1 68415.m02651 hypothetical protein                          33   0.20 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.26 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.4  
At2g34150.1 68415.m04180 expressed protein                             29   3.2  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   4.3  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   7.5  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   7.5  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   7.5  
At4g26490.1 68417.m03812 expressed protein                             27   9.9  
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d...    27   9.9  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    27   9.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  245 bits (600), Expect = 2e-65
 Identities = 112/178 (62%), Positives = 136/178 (76%)
 Frame = +3

Query: 81  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 260
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 261 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 440
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 441 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 614
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQM 189


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  239 bits (585), Expect = 1e-63
 Identities = 108/174 (62%), Positives = 133/174 (76%)
 Frame = +3

Query: 93  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 272
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 273 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 452
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 453 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 614
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQM 190


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  239 bits (585), Expect = 1e-63
 Identities = 108/174 (62%), Positives = 133/174 (76%)
 Frame = +3

Query: 93  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 272
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 273 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 452
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 453 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 614
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQM 190


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 131 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 250
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 414 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 563
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 369 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 470
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 542 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 372
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 197 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 319
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 411 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 563
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 101 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 280
           CH   C   P  G++   P G    Q       CD +A   G TC     C  HR P  C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366

Query: 281 VRHLITALRSACCTEVCR 334
            R           T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 569 RVGRLGVAWDSNVHKS 522
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 418 RGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFST 317
           R SR + WIW V      RP I V  +  AN  T
Sbjct: 29  RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62


>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
           cyclin-dependent kinase inhibitor 5 (ICK5) identical to 
           cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
           thaliana] GI:14422293
          Length = 189

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 392 LVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHIS 273
           L+     C+T   R S+G   KL+  T TE    D+E IS
Sbjct: 79  LIPSVNQCQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 161 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 280
           G  C Q+ C    CD  AS  G  C+ C C   H     C
Sbjct: 68  GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKC 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,858
Number of Sequences: 28952
Number of extensions: 353680
Number of successful extensions: 780
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)