Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h11r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    25   9.1  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 296 SKIKSNALT*RIEMKCKFIYILPTSQTHLFHLSRHQPTLVQRTNVL*LV*SKNLIYVGLN 117
           +K+ S  L  RI  K   +++ PT Q       +    +      + LV S+N +     
Sbjct: 419 AKLISLHLIYRILEKNSDLFMDPTLQFRGIPALKGMTLVHASRQYICLVLSRNAVSPVPQ 478

Query: 116 VTDICCNLFFYFVY 75
           V ++CC++F+  V+
Sbjct: 479 VFEVCCDIFYLMVF 492


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 516 SMLIGHS*RQSSPMESLTSMPYTVGKMMNKFSAHINNER 400
           +M   H    SS   ++ +   + G M+NKFS   N +R
Sbjct: 244 AMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQR 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,586
Number of Sequences: 5004
Number of extensions: 68480
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)