Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h11r
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0620 + 26656072-26656417,26656585-26657396                       30   2.3  
06_03_1110 - 27676172-27676522,27676608-27676703,27676845-276769...    28   7.2  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   7.2  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    28   7.2  
07_03_0970 - 23034521-23034928,23036173-23037081                       28   9.5  
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634...    28   9.5  

>04_04_0620 + 26656072-26656417,26656585-26657396
          Length = 385

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = -1

Query: 727 SLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNXXXXXXXXXXXXXXXX 554
           +L +LG+ A F+   + L+++  N  P  LYVS   QK  +EV+                
Sbjct: 278 ALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDEEGTTAVEAMYSPSSP 337

Query: 553 XXAFIDEPPVP---SFDADRPFVAAI 485
             +   +PP P   SF A+ PF+ AI
Sbjct: 338 GYSPGYQPPRPPPMSFVAEHPFMFAI 363


>06_03_1110 -
           27676172-27676522,27676608-27676703,27676845-27676976,
           27677518-27677622,27677946-27678119,27678361-27678430,
           27678515-27678696,27678974-27679083,27679360-27679464,
           27679570-27679648,27679808-27679848,27679931-27680009,
           27680364-27680492
          Length = 550

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +2

Query: 371 GM*YKYFLVFLSLLM-CALNLFIIFPTVYGIEVRDSMGEDCRYEWPISIEGRYWWLVNKC 547
           G  YKY L+++ L+  CA  +        G+     + E CR E+P +     W L    
Sbjct: 77  GAQYKYELLWIILIASCAALIIQSLAARLGVVTGKHLAEHCRAEYPKATNFILWILAELA 136

Query: 548 SAKCN 562
              C+
Sbjct: 137 VVACD 141


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 724 LPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVN 602
           L  LG+   F+ + + LT+++D+ E   L+VS    K+F+EVN
Sbjct: 371 LKSLGLHLPFSSE-ADLTEMVDSPEGKNLFVSSVFHKSFVEVN 412


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 401 LSLLMCALNLFIIFPTVYGIEVRDSMGEDCRYEWPISIEGRYWWLVNKCSA 553
           LS++   L++ +I P  +GI    S GE CR    IS+    +W  N   A
Sbjct: 450 LSVVGSGLDVDMILPNAWGIHTLLSQGEGCR----ISVSNPDFWKSNSLRA 496


>07_03_0970 - 23034521-23034928,23036173-23037081
          Length = 438

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 441 KMMNKFSAHINNERNTKKYLYYIPGVLILC 352
           K+     AHI N+  T+KYL  I  ++ LC
Sbjct: 359 KIYTNSVAHIMNDETTRKYLQSIKRLMTLC 388


>04_04_0050 -
           22360294-22361804,22362087-22362378,22363367-22363420,
           22363627-22363718,22364713-22364915,22365892-22366133,
           22366205-22366330,22366800-22366907,22367394-22367457,
           22367543-22367681,22367867-22368038,22368198-22368482
          Length = 1095

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 497 RSGNLRPWNLSLLCHIPWEK 438
           +SG LRPW+   LCH   EK
Sbjct: 416 KSGKLRPWDGPFLCHSCQEK 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,319
Number of Sequences: 37544
Number of extensions: 402888
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)