Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h11r
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      40   0.003
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      34   0.15 
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)                      30   2.4  
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      29   3.2  
SB_42175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             29   4.2  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = -1

Query: 727 SLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXXXXXXXXX 548
           +L +LG++ +F++  +  T I    E L+VS  + KAF+EVN                  
Sbjct: 248 ALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAAATAAIMMMRC 307

Query: 547 AFIDEPPVPSFDADRPFVAAI 485
           A + EP V  F AD PF+  I
Sbjct: 308 AIMREPLV--FRADHPFLFLI 326


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = -1

Query: 730 SSLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXXXXXXXX 551
           S L  LG+  IF+ + + L+ I    + LYVS A+ KA IEVN                 
Sbjct: 251 SLLQDLGVSDIFDSRKADLSGI-SAAKGLYVSSAIHKAHIEVNERGTVAAATTGVVMAKR 309

Query: 550 XAFIDEPPVPSFDADRPFVAAI 485
              ++E     F AD PF+ +I
Sbjct: 310 SLDMNE----VFYADHPFLFSI 327


>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
          Length = 372

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 376 VIQILFGIPFVVNVCTKFIHHFSHGIWHRSERFHGRRLPLRMAD 507
           V+ ++  +  +  V   FIHH  H   HR  R HG+   L  +D
Sbjct: 224 VVIVIVIVIIIATVIVIFIHHHLHRHRHRRRRRHGKAFFLAASD 267


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = -1

Query: 727 SLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXXXXXXXXX 548
           +L  +G   +F+   + L+ I  +  PL VS+ V KAF+EVN                  
Sbjct: 285 TLKGMGASDLFSPGKADLSGI--SAAPLVVSEVVHKAFVEVN----EEGTIAAAATGVGI 338

Query: 547 AFIDEPPVPSFDADRPFVAAI 485
             +  P  P F A+ PF+  I
Sbjct: 339 MLMSMPMNPVFYANHPFLFLI 359


>SB_42175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 393 KKYLYYIPGVLILC*YCAC 337
           KKY+Y+ PG LI C Y  C
Sbjct: 33  KKYIYFRPGSLIKCVYIRC 51


>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 676 LTKILDNDEPLYVSKAVQKAFIEVN 602
           +TK LD DEPL +  + +KA +E N
Sbjct: 80  ITKNLDKDEPLRIEISARKAVLEAN 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347,460
Number of Sequences: 59808
Number of extensions: 491527
Number of successful extensions: 1174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)