Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h11r
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    30   1.5  
At4g38380.1 68417.m05426 MATE efflux protein-related T19C21.18 A...    28   6.0  
At2g39400.1 68415.m04835 hydrolase, alpha/beta fold family prote...    28   7.9  

>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 724 LPKLGIQAIFNRQNSGLTKILD---NDEPLYVSKAVQKAFIEVN 602
           L  +G+ + FN    GLT+++D   N + LYVS  + KA IEV+
Sbjct: 227 LKDMGLTSPFNN-GGGLTEMVDSPSNGDDLYVSSILHKACIEVD 269


>At4g38380.1 68417.m05426 MATE efflux protein-related T19C21.18
           Arabidopsis thaliana chromosome II BAC T19C21 genomic
           sequence, PID:g3395439
          Length = 541

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 222 PNPSFPFIKTPTNSSAEDKCVVISVKQEPNIC 127
           PNP FPF+ T   S     C V+ + +E + C
Sbjct: 53  PNPMFPFV-TRRKSQTNPDCGVVKLGEEDDSC 83


>At2g39400.1 68415.m04835 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 311

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CVVISVKQEPNICWFKCH*YLLQS 94
           CV   VKQEP    F CH Y ++S
Sbjct: 20  CVWKPVKQEPKALLFLCHGYAMES 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,636
Number of Sequences: 28952
Number of extensions: 341943
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)