Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h11f
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.001
04_04_0619 + 26652923-26653267,26653440-26654273 36 0.018
05_06_0044 - 25150322-25151260 32 0.39
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.89
03_05_0294 + 22855503-22855946,22856346-22856399 31 0.89
01_01_1152 + 9170628-9171899 30 1.6
01_06_0887 + 32733300-32734565 29 2.1
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 29 2.7
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 29 3.6
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 4.8
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 4.8
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 28 6.3
02_04_0632 + 24614659-24615528,24615636-24616133 28 6.3
07_03_1280 + 25434933-25436153 27 8.3
07_01_0731 - 5566878-5567513 27 8.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 8.3
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 39.9 bits (89), Expect = 0.001
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +3
Query: 201 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP--DD--DTIRXXXXXXXXXX 368
+ KN+V SP S LAL+ G +ELL LG DD +++R
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 369 XXIKGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFD-NGAAAAGLINKWVE 545
G + A ++ E EL P + A + A NF + INKWV
Sbjct: 87 SASGGPRVSDACGVWHDE-TLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVS 145
Query: 546 NKTNERIKDLLSE 584
TN+ I ++L +
Sbjct: 146 KATNKLIPEILPD 158
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 36.3 bits (80), Expect = 0.018
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Frame = +3
Query: 201 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTIRXXXXXXXXXXXXIK 380
+ ++ N + SPL LAL+ GT +LL LG +
Sbjct: 16 ITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP 75
Query: 381 GVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGA-AAAGLINKWVENKTN 557
++F A I++ + L P+ + A A V+F N A AAA +N+++ TN
Sbjct: 76 QLSF--AAGIFV-DRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATN 132
Query: 558 ERIKDLLS 581
R+ + +S
Sbjct: 133 GRLNNTIS 140
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 420 EGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLS 581
+ L+P A VF A N AAA IN+W ++T +KD+LS
Sbjct: 6 DASLRLNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILS 57
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.7 bits (66), Expect = 0.89
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Frame = +3
Query: 204 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP--DD--DTIRXXXXXXXXXXX 371
+ +NVV SP+S LAL+ G +EL+ LG DD +++R
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADES 87
Query: 372 XIKGVTFNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENK 551
G + A ++ E L P + ADF++ ++ INKWV
Sbjct: 88 ESGGPRVSYACGVWHDE-RLALKPAYRA-------ADFQR----QPKSSRKKINKWVSKA 135
Query: 552 TNERIKDLLSE 584
TN+ I+++L +
Sbjct: 136 TNKLIREILPD 146
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 216 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDT 332
NV SPLS L+L+ G ++L++ LG+P T
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGT 83
>01_01_1152 + 9170628-9171899
Length = 423
Score = 29.9 bits (64), Expect = 1.6
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Frame = +3
Query: 213 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPD-DDTIRXXXXXXXXXXXXIKGVT 389
+N + SPLS LAL+ G ELL LG P + R + +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 390 FNVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVNF-DNGAAAAGLINKWVENKTNERI 566
F A +++ G L P+ A + A E +F A +N +V + T I
Sbjct: 119 F--ACGVWVDRG-RALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 567 KDLL 578
+D+L
Sbjct: 176 RDVL 179
>01_06_0887 + 32733300-32734565
Length = 421
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 TFNVANKIYIKEGDYELDPKLKK--DAVEVFDADFEKVNFDNGAAAAGLIN 533
TFN+ N+I ++ EL P+ K + ++ A F +G AGLIN
Sbjct: 123 TFNLPNRIQLEREALELAPEEKPLLHRLVIYTATLSSDPFMDGCVVAGLIN 173
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 375 IKGVTFNVANKIYIKEGDYELDPK-LKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENK 551
IK ++FN + KEG E P+ ++++ V+ + K N G A+ G+ + +
Sbjct: 98 IKALSFNYVAMLKEKEGALERSPRGVQRNTVQDNPLNVSKQNGYGGGASQGIQPNGLHSM 157
Query: 552 TNERIKDL 575
T R D+
Sbjct: 158 TGHRKADI 165
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 213 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 320
+NV SPLS L+L+ G ++L ++LG P
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -1
Query: 548 IFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKFWVELI----VTLLDVYFV 402
+ +PF+ A G + ++ F C +L +LLKFWV+L+ VT VYF+
Sbjct: 733 LISPFLVTANG---MFVIDLF--CTWFLGLLLLKFWVKLVHWTTVTPFLVYFI 780
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 382 PFIDF--NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 230
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 304 VNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTGF 125
V+ ++ A P V N S NG +SSS N + D + ++ T +
Sbjct: 7 VDCNNTANGFKPFVGNVEVISLSNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPY 66
Query: 124 FISNSVNSITV 92
+S+S N TV
Sbjct: 67 RLSDSANKFTV 77
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -2
Query: 313 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 224
P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 75 PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>07_03_1280 + 25434933-25436153
Length = 406
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = -2
Query: 232 GDDTTFFFLSSSLQNFAENLVIAEDKAFESILRTG-------FFISNSVNSITVKIN*KF 74
GDD T +FLS S A N+ + + + S + G +F+SNS + +++ +
Sbjct: 216 GDDETVYFLSKSGDVMATNMQRSASRQYSSAVTCGDGGEAVAYFLSNSGAVVACELSRRA 275
Query: 73 YLDL 62
+ +L
Sbjct: 276 FAEL 279
>07_01_0731 - 5566878-5567513
Length = 211
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 435 LDPKLKKDAVEVFDADFEKVNFDNG 509
LD D VE+ DADFE +FD+G
Sbjct: 95 LDYVYDDDDVELVDADFEDGSFDDG 119
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 376 IDFNFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDT 221
+D + D E+D+ + + R VN + V P + S S NGD T
Sbjct: 639 VDSHMDPDYESDDEFGNKKAVERSVNWARSDPFVSPVKVKYSNSSQKNGDAT 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,588
Number of Sequences: 37544
Number of extensions: 248123
Number of successful extensions: 596
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -