Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h10r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    30   0.31 
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    28   1.7  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   2.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.8  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    25   9.0  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   9.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.0  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.0  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = -2

Query: 323 HPTALFKFLYHFISTRWCMTPLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTG 144
           HP   F FL+ F+S  WCMT   A+      + I    +       +A  +A   T+  G
Sbjct: 257 HPIG-FSFLFGFLSVAWCMTDYDAT------AHIAEEIENAAVRAPNAIALALSITYVLG 309

Query: 143 WGGNLIASTSAIASAVPLLISEEL 72
           W  N++ + + + + +  LI+ EL
Sbjct: 310 WVFNIVLAFT-MGTDLDSLINSEL 332


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 659 AELTA-TPGKKFSSYPTRPINARLEYG 736
           A+L A TPG KFS +  + +  RLEYG
Sbjct: 540 ADLRAYTPGYKFSHWEMKGVPLRLEYG 566


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 597 CLRGHYPRIQRSCFFEILEYRQS*QLHRGRSFPAIQLGLSTRDWNT 734
           CL G   R   SCF+E L+++QS  L        I+  ++ +   T
Sbjct: 203 CLAGSLYRSCVSCFYEYLKWKQSIDLASSNDITVIESTIAPQQATT 248


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 424 WTGWISYHGLHWNIP 380
           W GW  Y  +HW  P
Sbjct: 434 WLGWTCYPSVHWAAP 448


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 124 AIRLPPHPVECVVIAATVCAELQIASL 204
           A RLPPH     V+AA V A + + +L
Sbjct: 325 ANRLPPHEEALEVLAAVVLAHINVFNL 351


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 310  SAVGCTMQENINKSVVLISKLCYAECSSVDHGMIS-SLSNSTTKILLEPVPVSSVERLPL 486
            S++        + S V  +    +  SSV    I+ SLS+S     +   P SSV  +  
Sbjct: 1041 SSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSS 1100

Query: 487  RSSVNKVEASTLTGCIYKVSLSS 555
             SSV    +ST+       +LSS
Sbjct: 1101 TSSVEGTASSTIAAAASAATLSS 1123



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 376 YAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVNKVEASTLTGCIYKVSLSS 555
           ++  S+     ISS  +S++ IL  P P S+   +   SS+    +S L+  I  + +SS
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTP-STSSLMISSSSIISGSSSILSSSISTIPISS 661

Query: 556 KMT 564
            ++
Sbjct: 662 SLS 664


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 84  NQQWYSRSYSRGRCDQVATPPS*MR 158
           N+QW  RSY    C Q+  P S  R
Sbjct: 147 NEQWSMRSYVSKNCIQMKIPASNQR 171


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 211 GVVRIVDTDKGGTEATRGVMHHLVEIKWYRNLKSAVGC 324
           GV+++ D        T   M H V  +WYR  +  +GC
Sbjct: 145 GVLKLADFGLSRDFGTPSHMSHQVITRWYRPPELFMGC 182


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = -2

Query: 284 STRWCMTPLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTGWGGN--LIASTSA 111
           S+   ++ +VAS    + +  ++TP    A  SS+  V+++ + +T    +  + ++TS+
Sbjct: 223 SSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSS 282

Query: 110 IASAVP 93
            ASA P
Sbjct: 283 SASASP 288


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/65 (27%), Positives = 36/65 (55%)
 Frame = -1

Query: 555 AAKTDFIYATGQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRV 376
           +AKT+++YA G+R    F  A PQ +  +      L+++  RR    G  ++V+ G+  +
Sbjct: 262 SAKTNWVYAKGER----FAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVF-GSDEL 316

Query: 375 TQLRN 361
            ++R+
Sbjct: 317 NKVRS 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,252
Number of Sequences: 5004
Number of extensions: 68889
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)