Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h10f
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    27   0.13 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.2  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = +3

Query: 300 TGNTGQIRLNRGEQVLIACTGSGRTIRHPNVASNLAVGTVSCQNNNLVTANWLRGNSAFG 479
           T  +  + +N GE ++I+C G G  +   N  +   + T +C++N     ++      F 
Sbjct: 3   TAGSKVVEINNGETIIISCPG-GFVMEDANNLTQSTILT-TCESN--TDFSFGSKTIDFR 58

Query: 480 QLTCSSHAHHDAQQTNTRCFNNHFVIRVGFIVNNV--FYPLYXSCFD 614
           ++ CS+     A+ T          I VG+ + +   F   +  CFD
Sbjct: 59  KIQCSNSPLRKARYTEKGTCKMGREIEVGYDLKSPDRFVRQFTICFD 105


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 324 DESDLYYQLDLNNFLCGYIQVEADQD 247
           +E  L+Y+ +  +F+  YI+VEAD++
Sbjct: 29  EEPPLFYE-ERPDFVAPYIKVEADEE 53


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +1

Query: 70  HCPPNFERIYQSQDNWL 120
           HCP  F   Y  +  W+
Sbjct: 605 HCPEGFNEFYNQRRRWM 621


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +1

Query: 70  HCPPNFERIYQSQDNWL 120
           HCP  F   Y  +  W+
Sbjct: 838 HCPEGFNEFYNQRRRWM 854


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +1

Query: 70  HCPPNFERIYQSQDNWL 120
           HCP  F   Y  +  W+
Sbjct: 838 HCPEGFNEFYNQRRRWM 854


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 145 KTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYIST 279
           KT+  P+S+ NN   S         A  H   +   +   L++ST
Sbjct: 153 KTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVST 197


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 387 NVASNLAVGTVSCQNNNLVTANWLRGNSAFGQ 482
           + +SNL V  + C N   V++  L   SA+ Q
Sbjct: 127 HTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQ 158


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 387 NVASNLAVGTVSCQNNNLVTANWLRGNSAFGQ 482
           + +SNL V  + C N   V++  L   SA+ Q
Sbjct: 127 HTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQ 158


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 350 RLHRIRPYDPSPQCCF*PCCRDGQLSKQ*SRHSQLAA 460
           R H   PY P     + P C+   +S   S +S++++
Sbjct: 22  RPHSPEPYPPRCPPIYEPSCQYSPVSNSDSENSEVSS 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,156
Number of Sequences: 336
Number of extensions: 3020
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)