Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h09f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0306 + 17307166-17309091 33 0.14
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 33 0.18
05_01_0141 - 937428-937717,938483-938705 32 0.43
07_01_0311 - 2211824-2212410,2213275-2213290 28 5.2
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 28 5.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 6.9
09_04_0182 + 15376025-15376498 28 6.9
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 9.2
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048... 27 9.2
>12_02_0306 + 17307166-17309091
Length = 641
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 240
G+G T+ G GA +G S T G GT+ G A G G TF G+ GV
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETFIGVGAGAGAGV 529
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 240
G+G T+ G GA +G S T G GT+ G A G G T G+ GV
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTVVGAGAGAGV 262
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 240
G+G T+ G GA +G S T G GT+ G A G G T G+ GV
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTGVGAGAGAGV 413
Score = 29.5 bits (63), Expect = 2.3
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 234
G+G T+ G GA +G S T G GT+ G A G G +G G +
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGAR-GGARDGVGVRL--TGGGAGAGAGV 151
Query: 233 AASLMLIRMWTRGVSC-PGTRGPTWTGDGTMGASTRAGPTSG 111
+SL + G C G RG G G GA T G
Sbjct: 152 GSSLAGV---GGGTLCGGGARGGARDGGGA-GAGVGCSLTGG 189
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 312
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -3
Query: 338 LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWT 159
LGT+ + AM TG TAGF +F+ S S L S +I+ WTR ++ G +T
Sbjct: 43 LGTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRLMARCGVASQPFT 94
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 465 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 286
++SH HG H G+ GH+GG+ H G+ L + + G HG + L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153
Query: 285 F 283
F
Sbjct: 154 F 154
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 477 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 367
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 477 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 367
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>07_01_0311 - 2211824-2212410,2213275-2213290
Length = 200
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Frame = -3
Query: 410 LGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGF--SSTFDCSGSTLSTGVA 237
L A AG+A I G +A G+G + + T TAG S+TF +G G A
Sbjct: 61 LAAGTAGTAGIGGNVAAGTAGTAGIGGTVTAGTVGTAGTAGIGGSATFGTAG---MGGNA 117
Query: 236 LAASLMLIRMWTRGVSCPGTRGPTWTGD----GTMGASTRAG 123
+ ++ + G GT G G GT+G T AG
Sbjct: 118 VFGTIGTAGI--GGSVAAGTAGMAGIGGNVTAGTVGTGTAAG 157
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -3
Query: 359 PSATITGLGTMMAGSAMITGE-TAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCP 183
P+ + G M G + +G +A +T S G AA M + + G++
Sbjct: 138 PTGGVPSGGLQMDGGGLPSGGLSAVMLTTGGAHAGGASGGELKAAFHMPVVVPGSGLAGD 197
Query: 182 GTRGPTWTGDGTMGASTRAGPTSGLS 105
G+ G G G M ++T +GPT+G S
Sbjct: 198 GSSGLA-RGSGAMFSNTSSGPTAGSS 222
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 480 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 379
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>09_04_0182 + 15376025-15376498
Length = 157
Score = 27.9 bits (59), Expect = 6.9
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 413 GLGATMAGSATITGATLGPSA-TITGLGTMMAGSAMITGETAGF-SSTFDCSGSTLSTGV 240
G G G G LGP +++G G+ +GSA G T+G S + G++ S G
Sbjct: 52 GSGGVGIGVGVGVGVGLGPGGVSVSGSGSG-SGSAAGVGSTSGSRSGSVSVGGASSSAGS 110
Query: 239 ALAASLMLIRMWTRGVSCPGTRGPTWTGDGT-MGASTRAGPTSGLS 105
+ +S +R S G+ + G G +G +G SGLS
Sbjct: 111 SAGSSAG--SGGSRTGSSAGSSAGSSGGSGLGIGFGQGSGSGSGLS 154
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 477 GHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDHRGYTRS 358
GH ++S D HQ H N H +G NG HD + + ++
Sbjct: 647 GHR-QMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQN 686
>08_02_0767 +
21004373-21004545,21004656-21004711,21004800-21004882,
21004942-21005112,21005806-21005997
Length = 224
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 359 PSATITGL-GTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSC 186
P + GL G +AG +M + + A +S D GV + L++ R+W + C
Sbjct: 9 PLGGLDGLYGVQLAGRSMYSDDEAVKTSIIDPLAREPQEGVGTSRRLLIRRLWQQRPPC 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,189
Number of Sequences: 37544
Number of extensions: 198610
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -