Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h06r
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0398 - 22598895-22599100,22599865-22599943                       28   3.3  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   4.4  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           27   5.8  
08_02_0218 - 14405739-14406096,14406322-14406326                       27   5.8  
05_06_0147 + 25986259-25987701                                         27   5.8  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    27   7.7  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    27   7.7  
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380...    27   7.7  

>02_04_0398 - 22598895-22599100,22599865-22599943
          Length = 94

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 136 GGSRESGCCSYVIHW-ECLSC 77
           GG    GCC +  HW ECL C
Sbjct: 73  GGHCRWGCCGHRNHWGECLRC 93


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 318 NCHTRPKQHNRYIYCIKLNKNISTDMGNACAAC 220
           +CH      ++ + C+ L ++I  D    CAAC
Sbjct: 384 SCHIECALQHQKVGCVDLGQSIQLDGNYCCAAC 416


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 265 QLNTVDIAVVLFRSCVTIP-GIFLKIYTFTIVLNKFHSH 378
           +LN +DI++  F   V    G   K+    + LNKFH+H
Sbjct: 289 KLNLIDISINSFTGVVPRSIGKLTKLSWLNLELNKFHAH 327


>08_02_0218 - 14405739-14406096,14406322-14406326
          Length = 120

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 155 SRVNNHKPFPVHRTTLAIPLTRQAAHALPMSVEMFLFNL 271
           +R+N+     +  T  A+PL+  A   +P+S+   LF+L
Sbjct: 17  TRINSEVDLTLRMTNYALPLSVGAPDLIPLSLTSSLFSL 55


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 14  HILPLVYHALIILEVACAIVLAAETFPVN--DIXXXXXXXXXXXXVLNPSRVNNHKPFP 184
           H++P+V  A ++L    A+V+A  T P +  D               NPS   +H P P
Sbjct: 19  HLIPMVELAKLLLRRGLAVVIAVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPP 77


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 143 VLNPSRVNNHKPFPVHRTTLAIPLTRQAAHALPMSVEMFLFNLIQ 277
           V+N   V  +KPFP   T +A   T  AA     + ++ L+  +Q
Sbjct: 112 VVNTYNVTGYKPFPAASTPIAFNATDLAADESAATGKLRLYGKLQ 156


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 241 HVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYT 345
           H+ GN L+ L+ +  A+ L+  C    G+F  +Y+
Sbjct: 181 HMAGNNLLNLSGLPTALTLYFVCFAGHGVFPTVYS 215


>01_06_0511 +
           29937167-29937264,29937362-29937577,29937938-29938093,
           29939614-29939671,29939768-29940085,29940160-29940399,
           29940489-29940587,29940676-29940711,29941183-29941368,
           29941442-29941709,29941805-29941911
          Length = 593

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 365 LFNTIVNVYILRNIPGIVTQDLNNTTAISTVLS*TRTFPQT 243
           LFN  +  YI+ NI  +V  +  NT  +  ++  T  F +T
Sbjct: 255 LFNMGLTSYIIGNITNLVVHETTNTFKMRDMVQRTSVFGRT 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,146,483
Number of Sequences: 37544
Number of extensions: 185943
Number of successful extensions: 382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)