Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h06r
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical ...    29   0.99 
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    29   0.99 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    29   0.99 
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    26   9.2  
AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical ...    26   9.2  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    26   9.2  

>AF039038-9|AAO12408.1|  559|Caenorhabditis elegans Hypothetical
           protein K06A5.8d protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 309 TRPKQHNRYIYCIKLNKN 256
           TRPKQH   +YC+  N N
Sbjct: 408 TRPKQHRGSVYCLSFNPN 425


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 309 TRPKQHNRYIYCIKLNKN 256
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 309 TRPKQHNRYIYCIKLNKN 256
           TRPKQH   +YC+  N N
Sbjct: 674 TRPKQHRGSVYCLSFNPN 691


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = -1

Query: 172 MVINSTWIQDCWGGSRESGCCSYV-IHWECL------SCQYYCTS 59
           +++N  W+      S E+G   +  I +ECL       CQYYCTS
Sbjct: 104 LLVNDPWVHKTI--SNENGVSVFTSIRFECLPSFYGPKCQYYCTS 146


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 241 HVCGNVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHS 375
           + C    V LNTV I +VLFRS  ++ G +  + T+  V + F++
Sbjct: 15  YFCVGCSVFLNTVLIILVLFRSPHSL-GFYKYLMTYIYVFDLFYA 58


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 408 DPTRSQSHSQMRMEFI*YNSECIYFKKYSRNCH 310
           DP  +  HS M MEFI  N+ C   K Y+ + H
Sbjct: 240 DPEDNSIHSNMEMEFI-QNTTC---KSYTNSLH 268


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -1

Query: 199 SRSMDWKRFMVINSTWIQDC 140
           +++++WK   ++ S WI+ C
Sbjct: 327 AKAVEWKSMQIVQSRWIRKC 346


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 VDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFH 372
           VD+ V L    +T   I    Y F I L+KFH
Sbjct: 374 VDVIVSLVGCLLTFSAIGFTCYEFAISLDKFH 405


>AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical
           protein F54D10.8 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 321 RNCHTRPKQHNRYIYCIKLNKNIST 247
           ++CH R K H+++I  + L++ IS+
Sbjct: 251 QDCHLRSKYHSKWITFLDLDERISS 275


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 VDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFH 372
           VD+ V L    +T   I    Y F I L+KFH
Sbjct: 374 VDVIVSLVGCLLTFSAIGFTCYEFAISLDKFH 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,290
Number of Sequences: 27780
Number of extensions: 173802
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)