Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h06r
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   2.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   3.1  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   3.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 154 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 62
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETAKYYVT 88


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 154 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 62
           W+ D     RE G    +  W+  + +YY T
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVT 31


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 327 YSRNCHTRPKQHNRYIY 277
           ++ +C  +PK HN  IY
Sbjct: 23  WALDCSIKPKDHNGSIY 39


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 154 WIQDCWGGSRESGCCSYVIHWECLSCQYYCT 62
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETSKYYVT 88


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 161 LYLDSRXXXXXXXXXXXXLCHSLGMSQL 78
           L+LDSR            +CH L MS L
Sbjct: 274 LWLDSRSTERMIAASVNLICHILCMSDL 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,379
Number of Sequences: 438
Number of extensions: 1986
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)