Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h06r
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family...    27   6.5  
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    27   6.5  
At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containi...    26   8.6  

>At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 515

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 395 RRVTVKCEWNLFNTIVNVYILRNIPGIVTQDLNNTTAIST 276
           R VT+  E  +FN+   VY    +  +V ++  N + +ST
Sbjct: 313 RMVTISVEEGVFNSATLVYFNAKVMHLVMEETKNGSILST 352


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 395 RRVTVKCEWNLFNTIVNVYILRNIPGIVTQDLNNTTAIST 276
           R VT+  E  +FN+   VY    +  +V ++  N + +ST
Sbjct: 520 RMVTISVEEGVFNSATLVYFNAKVMHLVMEETKNGSILST 559


>At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 542

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 253 NVLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHSHLTVTL 393
           + +V+L   D+ + L +  + + GI   +YTF IV+N F     V+L
Sbjct: 87  SAIVKLKKYDVVISLGKK-MEVLGIRNDLYTFNIVINCFCCCFQVSL 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,273
Number of Sequences: 28952
Number of extensions: 155940
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)