Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04r
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            25   0.46 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.46 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.61 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 312 APEEGGGAVSLEAGAGRPRAAA 247
           +PE GGG   L A +G P  AA
Sbjct: 28  SPEAGGGGFWLAAASGAPHPAA 49


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 312 APEEGGGAVSLEAGAGRPRAAA 247
           +PE GGG   L A +G P  AA
Sbjct: 28  SPEAGGGGFWLAAASGAPHPAA 49


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 522 KKHCESEGIEKVFLPSVGETVDAT 451
           KK C SE + +   P V ETV AT
Sbjct: 159 KKGCSSEEVFQFECPKVNETVAAT 182


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 324 ESDAAPEEGGGAVSLEAGAGRPRAAAFVNTV 232
           E  A PE+GGGA +  +G+   +A    N +
Sbjct: 112 EGVAGPEKGGGAGAAASGSAAAQAGQPDNAI 142


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 547 GPEPHHCPGLGLRHDPEQGLP 609
           G  PHH  G      P QG+P
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMP 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,067
Number of Sequences: 336
Number of extensions: 2017
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)