Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04r
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...   107   2e-24
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   6.1  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   8.1  

>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
            CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score =  107 bits (257), Expect = 2e-24
 Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 25/250 (10%)
 Frame = -1

Query: 714  QDEEMSEVPSKCVSSVRQVHVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAA 535
            ++E+  EVPSK ++  + + V   V++I++EG  DG SL  ++ Q  P  +V + AS   
Sbjct: 548  EEEDEDEVPSKIITDEKTIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLIHASTEE 607

Query: 534  LHTLKKHCESEG--IEKVFLPSVGETVDATTESHIYQVKLTDGLMRGLVWRQAGDAELAW 361
               +KK C S     + V++P+ GE ++ + + + + +KL D L++ L+W + G+ E++ 
Sbjct: 608  KEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKNLIWTKVGNCEVSH 667

Query: 360  LSAVVAPRTHARESDAAPE----EGG-----------------GAVSLEAGAGR-PRAA- 250
            + A V     + E D   E    +G                   A++L +   R PRAA 
Sbjct: 668  MLAKVEISKPSEEEDKKEEVEKKDGDKERNEEKKEEKETLPVLNALTLRSDLARAPRAAP 727

Query: 249  AFVNTVXXXXXXXXXXXXXLQPDLGAGTLTCCSGTLAVRRMENGQVSLEGVLSEEYYKVR 70
              V  +             +  +L    +  C G +AVR++  G++S+EG LS  ++++R
Sbjct: 728  LLVGNIRLAYLRKALLDQGISAELKGEGVLLCGGAVAVRKLSGGKISVEGSLSNRFFEIR 787

Query: 69   ELLYEQFAIV 40
            +L+Y+  A+V
Sbjct: 788  KLVYDALAVV 797


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 675 SSVRQVHVKAHVEYIELEGRCDGESLLR-VVSQTKPWAVVGLRASEAALHTLKKHCE 508
           ++  Q H   + E +  + R +GE +LR V  Q   + ++     E  L TL++ C+
Sbjct: 325 NATAQYHADKNGEKLSQQDRIEGEQILRDVYCQLPSYDLIVPHLIEHGLGTLRETCK 381


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 13 LKLIYTIYSDYRELFVQEFSHFV 81
          +KL + +YSDY  L     S+FV
Sbjct: 8  VKLFWNVYSDYAVLIAISLSYFV 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,434
Number of Sequences: 5004
Number of extensions: 31748
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)