Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10h04r
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              30   2.1  
SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)                    29   3.7  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   8.6  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         28   8.6  

>SB_22166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
 Frame = -1

Query: 630 ELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEG---IEKVFLPSVGETV 460
           + EGR DGES+ R+++   P  +V +     +   L  +C+S     + +VF P+VGETV
Sbjct: 420 DFEGRSDGESIKRILNLVNPRKLVLVHGDSKSTQHLADYCQSSSSIQVSQVFTPAVGETV 479

Query: 459 DATTESHIYQVK 424
           +AT E HIYQ K
Sbjct: 480 EATGERHIYQKK 491


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
 Frame = -1

Query: 513 CESEGIEKVFLPSVGETVDATTESHIYQVKLTDGLMRGLVWRQAGDAELAWLSAVVAPRT 334
           CE EG     LP +      +T SH Y  ++T       +W    + E  WL   V P  
Sbjct: 97  CEKEGRHDFELPLLLPRRSTSTLSHQYNNEITK--YGEWLWEIDANNEYHWLRENVIPPP 154

Query: 333 HARESDAAPEEGGGAV----SLEAG---AGRPRAAAFVN 238
              E D  P+     +    ++EAG    G P A  FV+
Sbjct: 155 PPGEHDKRPQYESDRIAFMENIEAGLVQPGMPAAQPFVH 193


>SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)
          Length = 372

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
 Frame = -1

Query: 708 EEMSEVPSKCVSSVRQVHVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALH 529
           EE S   ++ +  V   H+K   + I+L   CD E L + +++    ++   ++ +  L 
Sbjct: 64  EEWSYFTTRWLDYVEATHIKGKEKVIQLLECCD-EQLRKDLTRNAGGSLTS-KSPQEVLE 121

Query: 528 TLKKHC---ESEGIEKVFLPSVGETVDATTESHIYQVKLTDGLMRGLV 394
            +KK     E+  + KV L ++ + +D T  S   +++   G+ + LV
Sbjct: 122 AIKKLAVREENAMVAKVQLHNMRQDIDETIRSFCARLRGQAGVCKFLV 169


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 498  IEKVFLPSVGETVDATTESHIYQVKLTDGL 409
            +  ++LP +G  +DA T+ H Y+ + T GL
Sbjct: 1220 VAALYLPLLGVVIDARTQLHGYRAEETSGL 1249


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 548 PARRRCTPSKNIVSLKESKRCSYRPLGKPSTPRQSHTS 435
           P R+R  P   +V + E++RC ++P      P +  TS
Sbjct: 144 PFRKRSLPIITVVVIPENRRCHFKPSMPNRKPTEPTTS 181


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 540  AALHTLKKHCESEGIEKVFLPSVGETV-DATTES 442
            +A H     CE  G+ +VF+PS G  V +AT +S
Sbjct: 3636 SAPHLGSASCECSGLNRVFMPSDGSCVCEATFQS 3669


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 594 RVVSQTKPWAVVGLRASEAALHT----LKKHCESEGIEK 490
           R +S   PW  +  R   A  H     + +HC++EG++K
Sbjct: 240 RAISAIFPWVTLNHRTVRATAHVAVQRIWEHCKAEGLDK 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,916
Number of Sequences: 59808
Number of extensions: 280817
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)