Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10h04r
(714 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 119 1e-26
AB037788-1|BAA92605.1| 579|Homo sapiens KIAA1367 protein protein. 119 1e-26
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 44 4e-04
BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein. 44 4e-04
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 44 4e-04
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 44 4e-04
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 44 4e-04
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 44 4e-04
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 44 4e-04
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 44 4e-04
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 44 4e-04
AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens ... 44 4e-04
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 119 bits (286), Expect = 1e-26
Identities = 56/140 (40%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Frame = -1
Query: 711 DEEMSEVPSKCVSSVRQVHVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAAL 532
D+++S+VP+KC+S+ + +KA V YI+ EGR DG+S+ ++++Q KP ++ + A
Sbjct: 512 DQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEAS 571
Query: 531 HTLKKHCESEGIE--KVFLPSVGETVDATTESHIYQVKLTDGLMRGLVWRQAGDAELAWL 358
L + C + G + KV++P + ETVDAT+E+HIYQV+L D L+ L + +A DAELAW+
Sbjct: 572 QDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWI 631
Query: 357 SAVVAPRTHARESDAAPEEG 298
V+ R ++ EEG
Sbjct: 632 DGVLDMRVSKVDTGVILEEG 651
Score = 55.6 bits (128), Expect = 2e-07
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = -1
Query: 171 GTLTCCSGTLAVRRMENGQVSLEGVLSEEYYKVRELLYEQFAIV 40
G + C+ +AVRR E G++ LEG L +++Y++R+LLYEQ+AIV
Sbjct: 739 GGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>AB037788-1|BAA92605.1| 579|Homo sapiens KIAA1367 protein protein.
Length = 579
Score = 119 bits (286), Expect = 1e-26
Identities = 56/140 (40%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Frame = -1
Query: 711 DEEMSEVPSKCVSSVRQVHVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAAL 532
D+++S+VP+KC+S+ + +KA V YI+ EGR DG+S+ ++++Q KP ++ + A
Sbjct: 309 DQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEAS 368
Query: 531 HTLKKHCESEGIE--KVFLPSVGETVDATTESHIYQVKLTDGLMRGLVWRQAGDAELAWL 358
L + C + G + KV++P + ETVDAT+E+HIYQV+L D L+ L + +A DAELAW+
Sbjct: 369 QDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWI 428
Query: 357 SAVVAPRTHARESDAAPEEG 298
V+ R ++ EEG
Sbjct: 429 DGVLDMRVSKVDTGVILEEG 448
Score = 55.6 bits (128), Expect = 2e-07
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = -1
Query: 171 GTLTCCSGTLAVRRMENGQVSLEGVLSEEYYKVRELLYEQFAIV 40
G + C+ +AVRR E G++ LEG L +++Y++R+LLYEQ+AIV
Sbjct: 536 GGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 579
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 375 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 434
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 435 CYMPANGETVTLPTSPSI-PVGISLGLLK 462
>BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein.
Length = 429
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 204 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 263
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 264 CYMPANGETVTLPTSPSI-PVGISLGLLK 291
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 375 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 434
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 435 CYMPANGETVTLPTSPSI-PVGISLGLLK 462
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 248 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 307
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 308 CYMPANGETVTLPTSPSI-PVGISLGLLK 335
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 298 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 357
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 358 CYMPANGETVTLPTSPSI-PVGISLGLLK 385
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 289 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 348
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 349 CYMPANGETVTLPTSPSI-PVGISLGLLK 376
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 402 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 461
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 462 CYMPANGETVTLPTSPSI-PVGISLGLLK 489
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 373 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 432
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 433 CYMPANGETVTLPTSPSI-PVGISLGLLK 460
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 274 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 333
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 334 CYMPANGETVTLPTSPSI-PVGISLGLLK 361
>AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ20542 fis, clone KAT11395. ).
Length = 292
Score = 44.4 bits (100), Expect = 4e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -1
Query: 666 RQV-HVKAHVEYIELEGRCDGESLLRVVSQTKPWAVVGLRASEAALHTLKKHCESEGIEK 490
RQV VK VEY+ D + ++++V Q +P +V+ + + LK+ E E
Sbjct: 77 RQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVN 136
Query: 489 VFLPSVGETVDATTESHIYQVKLTDGLMR 403
++P+ GETV T I V ++ GL++
Sbjct: 137 CYMPANGETVTLPTSPSI-PVGISLGLLK 164
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,860,673
Number of Sequences: 237096
Number of extensions: 1433247
Number of successful extensions: 5010
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5002
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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